Table 2.
DomFun ranking analysis based on comparing different evaluation methods
| Ontology | Type | Mode | FF-HyI-Fis | FF-PCC-Sto | FF-Jac-Sto | FF-Sim-Sto | SF-HyI-Fis | SF-PCC-Sto | SF-Jac-Sto | SF-Sim-Sto |
|---|---|---|---|---|---|---|---|---|---|---|
| GOMF | 1 | 1 | 2.5 | 4.5 | 4.5 | 2.5 | 8 | 6 | 1 | 7 |
| GOMF | 1 | 2 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
| GOMF | 2 | 1 | 2 | 3 | 4 | 1 | 8 | 6 | 7 | 5 |
| GOMF | 2 | 2 | 2 | 3 | 4 | 1 | 8 | 7 | 6 | 5 |
| GOBP | 1 | 1 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
| GOBP | 1 | 2 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
| GOBP | 2 | 1 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
| GOBP | 2 | 2 | 2 | 3 | 4 | 1 | 8 | 6 | 5 | 7 |
| GOCC | 1 | 1 | 3 | 3 | 3 | 1 | 8 | 7 | 5 | 6 |
| GOCC | 1 | 2 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
| GOCC | 2 | 1 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
| GOCC | 2 | 2 | 2 | 3.5 | 3.5 | 1 | 8 | 6 | 5 | 7 |
Type 1: no knowledge, type 2: limited knowledge. Mode 1: Full, mode 2: partial. FF FunFams, SF superfamilies. Jac Jaccard, Sim Simpson, PCC Pearson correlation coefficient, HyI hypergeometric, Sto Stouffer, Fis Fisher