Table 3.

$F_{\mathit{max}}$ top values: DomFun (Simpson + Stouffer) vs. CAFA 3 methods

Ontology	Type	Mode	Top DomFun $F_{\mathit{max}}$	DomFun coverage	Top CAFA 3 $F_{\mathit{max}}$	CAFA 3 coverage
GOMF	1	1	0.357	0.71	0.618	1
GOMF	1	2	0.567	0.41	0.622	0.02
GOMF	2	1	0.431	0.49	0.622	1
GOMF	2	2	0.624	0.49	0.623	0.88
GOBP	1	1	0.275	0.46	0.397	1
GOBP	1	2	0.402	0.46	0.418	0.62
GOBP	2	1	0.37	0.55	0.598	1
GOBP	2	2	0.492	0.55	0.64	0.83
GOCC	1	1	0.412	0.49	0.615	1
GOCC	1	2	0.606	0.49	0.908	0
GOCC	2	1	0.422	0.51	0.615	1
GOCC	2	2	0.602	0.51	0.825	0

Type 1: no knowledge, type 2: limited knowledge. Mode 1: full evaluation, mode 2: partial evaluation