Table 1.
Details of recombination event at the beginning of SARS-CoV-2 genome
| Program | p-value | Beginning breakpoint | End breakpoint | *Parents | |||
|---|---|---|---|---|---|---|---|
| position in alignment | position in genome without gap | position in alignment | position in genome without gap | Major | Minor | ||
| RDP | 8.66 × 10–87 | 1 | 1 | 12,394 | 11,330 | KJ473814 | MG772934 |
| GENECONV | 2.68 × 10–62 | 661 | 620 | 8920 | 7918 | ||
| BootScan | 2.44 × 10–74 | 3690 | 2984 | 12,393 | 11,331 | ||
| MaxChi | 1.10 × 10–45 | 535 | 497 | 12,469 | 11,405 | ||
| Chimaera | 1.09 × 10–48 | 968 | 918 | 12,347 | 11,283 | ||
| SiSscan | 1.34 × 10–96 | 3661 | 2973 | 12,468 | 11,404 | ||
| 3Seq | 6.09 × 10–186 | 1 | 1 | 12,470 | 11,406 | ||
| LARD | 1.72 × 10–145 | 1 | 1 | 12,394 | 11,330 | ||
*Parents belonging to the bat coronavirus