Table 2.
Details of recombination event at the end of SARS-CoV-2 genome
| Program | p-value | Beginning breakpoint | End breakpoint | *Parents | |||
|---|---|---|---|---|---|---|---|
| position in alignment | position in genome without gap | position in alignment | position in genome without gap | Major | Minor | ||
| RDP | 3.29 × 10–48 | 27,088 | 24,212 | 32,336 | 29,194 | KJ473814 | MG772934 |
| GENECONV | 9.06 × 10–44 | 28,834 | 25,921 | 31,394 | 28,284 | ||
| BootScan | 8.77 × 10–44 | 27,897 | 25,022 | 31,546 | 28,419 | ||
| MaxChi | 8.41 × 10–30 | 27,088 | 24,212 | 32,336 | 29,194 | ||
| Chimaera | 5.71 × 10–32 | 26,670 | 23,817 | 32,336 | 29,194 | ||
| SiScan | 4.35 × 10–56 | 28,117 | 25,228 | 32,336 | 29,194 | ||
| Phylpro | 4.05 × 10–13 | 27,088 | 24,212 | 32,336 | 29,194 | ||
| 3Seq | 4.05 × 10–13 | 26,668 | 23,815 | 32,337 | 29,195 | ||
| LARD | 1.20 × 10–79 | 27,088 | 24,212 | 32,336 | 29,194 | ||
*Parents belonging to bat coronavirus