Table 3.

Details of recombination event at the beginning of the spike gene in SARS-CoV-2

Program	p-value	Beginning breakpoint		End breakpoint		*Parents
		Position in alignment	Position in genome without gap	Position in alignment	Position in genome without gap	Major	Minor
RDP	7.74 × 10–18	367	352	916	901	MT121216	MT040333
GENECONV	3.56 × 10–07	473	458	599	584
BootScan	2.17 × 10–15	367	352	916	901
MaxChi	9.50 × 10–9	350	335	916	901
Chimaera	1.05 × 10–02	355	340	916	901
SiScan	1.30 × 10–23	367	352	916	901
Phylpro
3Seq	4.65 × 10–03	328	313	798	783
§LARD	–			–

^*Parents belonging to pangolin coronavirus

^§ Unknown