REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
Original data used to create Figure 4C in Yao et al. (2021) | Yao et al. (2021) | https://ars.els-cdn.com/content/image/1-s2.0-S2589004221007537-mmc2.xlsx |
PGC Schizophrenia wave 3 GWAS 2021 | The Schizophrenia Working Group of the Psychiatric Genomics Consortium et al. (2020) | https://doi.org/10.6084/m9.figshare.14672178 |
Instruction on obtaining and making the GRCh37/hg19 or GRCh38/hg38 version of 1000G EUR plink file set (SNP_Loc_File) | This article | https://github.com/endeneon/MAGMA_analysis_protocol/tree/main/g1k_eur_hg38 |
Revised gene location file (in GRCh37/hg19) containing gene symbols as IDs (Gene_Loc_File), | This article | https://github.com/endeneon/MAGMA_analysis_protocol/blob/main/data_files/Rev.NCBI37.3.gene.loc |
Software and algorithms | ||
MAGMA software, gene location, and GRCh37/hg19 plink population file sets | https://ctg.cncr.nl/software/magma | |
H-MAGMA codes and annotation files | https://github.com/thewonlab/H-MAGMA | |
Miniconda | https://docs.conda.io/en/latest/miniconda.html |