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. 2022 Jan 3;12:704118. doi: 10.3389/fgene.2021.704118

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Copyright © 2022 Deng, Zhang, Garrick, Gao, Wang and Zhao.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Influence of different factors on imputation reliability in LCWGS data. For each fixed level of the factors under each scenarios, the average at different levels of all other factors is taken as the reliability. Imputed alleles are binned according to their MAF count in each scenarios. Dotted line with a triangle sign represents Beagle5.1, while the solid line with a round sign represents Minimac4. Different colored signs represent different levels. (A) Influence of reference population size on imputation reliability. (B) Influence of the proportion of target markers or SNP density on imputation reliability. (C) Influence of genetic distance between reference population and target population on imputation reliability.