TABLE 3.
Detection of positive selection sites of chloroplast genes in Acer genus.
| Genes | Model | Parameters | 2ΔL | Sites |
|---|---|---|---|---|
| accD | M0 (one ratio) | ω = 0.312 | ||
| M1 (neutral) | −3,194.888 | 4.319 | ||
| M2 (selection) | −3,192.729 | 8 | ||
| M7 (beta) | −3,194.917 | 4.405 | ||
| M8 (beta&ω) | −3,192.714 | 13 | ||
| atpA | M0 (one ratio) | ω = 0.414 | ||
| M1 (neutral) | −3,062.544 | 68.257 | ||
| M2 (selection) | −3,028.416 | 12 | ||
| M7 (beta) | −3,062.550 | 68.092 | ||
| M8 (beta&ω) | −3,028.500 | 12 | ||
| atpB | M0 (one ratio) | ω = 0.195 | ||
| M1 (neutral) | −2,767.483 | 19.820 | ||
| M2 (selection) | −2,757.573 | 3 | ||
| M7 (beta) | −2,768.353 | 21.511 | ||
| M8 (beta&ω) | −2,757.597 | 3 | ||
| clpP | M0 (one ratio) | ω = 0.290 | ||
| M1 (neutral) | −1,222.189 | 75.140 | ||
| M2 (selection) | −1,184.619 | 5 | ||
| M7 (beta) | −1,222.474 | 70.978 | ||
| M8 (beta&ω) | −1,186.985 | 6 | ||
| ndhA | M0 (one ratio) | ω = 0.215 | ||
| M1 (neutral) | −2,101.206 | 16.580 | ||
| M2 (selection) | −2092.916 | 3 | ||
| M7 (beta) | −2,101.626 | 17.610 | ||
| M8 (beta&ω) | −2092.821 | 3 | ||
| ndhD | M0 (one ratio) | ω = 0.238 | ||
| M1 (neutral) | −2,926.687 | 24.031 | ||
| M2 (selection) | −2,914.671 | 5 | ||
| M7 (beta) | −2,926.898 | 24.425 | ||
| M8 (beta&ω) | −2,914.686 | 5 | ||
| ndhF | M0 (one ratio) | ω = 0.398 | ||
| M1 (neutral) | −5,574.424 | 97.807 | ||
| M2 (selection) | −5,525.520 | 13 | ||
| M7 (beta) | −5,577.921 | 109.337 | ||
| M8 (beta&ω) | −5,523.252 | 22 | ||
| PetD | M0 (one ratio) | ω = 0.271 | ||
| M1 (neutral) | −942.151 | 11.366 | ||
| M2 (selection) | −936.469 | 4 | ||
| M7 (beta) | −942.381 | 11.793 | ||
| M8 (beta&ω) | −936.484 | 4 | ||
| psaI | M0 (one ratio) | ω = 3.320 | ||
| M1 (neutral) | −190.292 | 23.988 | ||
| M2 (selection) | −178.298 | 2 | ||
| M7 (beta) | −192.000 | 27.404 | ||
| M8 (beta&ω) | −178.298 | 2 | ||
| rbcL | M0 (one ratio) | ω = 0.323 | ||
| M1 (neutral) | −2,649.421 | 94.692 | ||
| M2 (selection) | −2,602.075 | 8 | ||
| M7 (beta) | −2,649.889 | 95.034 | ||
| M8 (beta&ω) | −2,602.372 | 8 | ||
| rpoA | M0 (one ratio) | ω = 0.425 | ||
| M1 (neutral) | −1960.904 | 18.516 | ||
| M2 (selection) | −1951.646 | 9 | ||
| M7 (beta) | −1961.168 | 19.006 | ||
| M8 (beta&ω) | −1951.665 | 9 | ||
| rpoB | M0 (one ratio) | ω = 0.170 | ||
| M1 (neutral) | −6,023.244 | 25.005 | ||
| M2 (selection) | −6,010.741 | 9 | ||
| M7 (beta) | −6,023.711 | 25.873 | ||
| M8 (beta&ω) | −6,010.775,053 | 9 | ||
| rpoc1 | M0 (one ratio) | ω = 0.263 | ||
| M1 (neutral) | −4,017.309 | 50.238 | ||
| M2 (selection) | −3,992.190 | 11 | ||
| M7 (beta) | −4,018.563 | 51.186 | ||
| M8 (beta&ω) | −3,992.970 | 11 | ||
| rpoc2 | M0 (one ratio) | ω = 0.528 | ||
| M1 (neutral) | −10233.557 | 465.104 | ||
| M2 (selection) | −10001.005 | 45 | ||
| M7 (beta) | −10233.873 | 461.100 | ||
| M8 (beta&ω) | −10003.323 | 48 | ||
| rps8 | M0 (one ratio) | ω = 0.524 | ||
| M1 (neutral) | −856.327 | 14.975 | ||
| M2 (selection) | −848.840 | 4 | ||
| M7 (beta) | −854.884 | 12.935 | ||
| M8 (beta&ω) | −848.417 | 5 | ||
| rps11 | M0 (one ratio) | ω = 0.273 | ||
| M1 (neutral) | −746.510 | 7.472 | ||
| M2 (selection) | −742.774 | 1 | ||
| M7 (beta) | −746.512 | 7.466 | ||
| M8 (beta&ω) | −742.779 | 1 | ||
| rps19 | M0 (one ratio) | ω = 0.320 | ||
| M1 (neutral) | −603.312 | 16.924 | ||
| M2 (selection) | −594.850 | 3 | ||
| M7 (beta) | −603.357 | 17.004 | ||
| M8 (betaω) | −594.855 | 3 | ||
| ycf1 | M0 (one ratio) | ω = 0.632 | ||
| M1 (neutral) | −14774.834 | 157.711 | ||
| M2 (selection) | −14695.978 | 42 | ||
| M7 (beta) | −14774.915 | 156.596 | ||
| M8 (beta&ω) | −14696.617 | 61 | ||
| ycf2 | M0 (one ratio) | ω = 0.840 | ||
| M1 (neutral) | −10754.288 | 44.430 | ||
| M2 (selection) | −10732.073 | 81 | ||
| M7 (beta) | −10754.623 | 45.095 | ||
| M8 (beta&ω) | −10732.076 | 81 | ||
| ycf3 | M0 (one ratio) | ω = 0.161 | ||
| M1 (neutral) | −899.336 | 16.519 | ||
| M2 (selection) | −891.077 | 1 | ||
| M7 (beta) | −900.724 | 19.279 | ||
| M8 (beta&ω) | −891.084 | 1 |