Table A.1.
Estimates of observed richness and correlation with original sequencing depth for data processed with DADA2 with priors.
| Study | Processing | Sub-sampling | 1 | Mean observed richness (SD) | Mean singletons | |
|---|---|---|---|---|---|---|
| Aho et al., 2019 (C) | Unpooled | None | 0.22 | 796.98 (287.02) | 190.44 | |
| Post | 0.02 | 462.54 (152.98) | 138.80 | |||
| Pre | −0.09 | 466.27 (115.35) | 228.85 | |||
| Pooled | None | 0.08 | 3178.44 (1104.34) | 2045.37 | ||
| Post | −0.40 | 975.1 (350.43) | 560.27 | |||
| Pre | −0.24 | 1283.32 (314.91) | 1024.80 | |||
| Almeida-Santos et al., 2021 (A) | Unpooled | None | 0.31 | 345.77 (136.82) | 13.40 | |
| Post | 0.23 | 293.47 (108.68) | 39.62 | |||
| Pre | 0.24 | 204.55 (79.44) | 15.23 | |||
| Pooled | None | 0.30 | 592.55 (166.24) | 129.40 | ||
| Post | 0.10 | 383.4 (111.94) | 94.47 | |||
| Pre | 0.15 | 337.98 (94.43) | 95.28 | |||
| Manor et al., 2018 (B) | Unpooled | None | 0.40 | 516.07 (123.08) | 48.00 | |
| Post | 0.22 | 386.8 (86.82) | 84.05 | |||
| Pre | 0.13 | 290.88 (59.89) | 46.23 | |||
| Pooled | None | 0.24 | 819.84 (216.97) | 250.89 | ||
| Post | −0.06 | 472.11 (109.51) | 147.79 | |||
| Pre | −0.05 | 436.06 (96.90) | 158.07 |