Table 1.
Top Ten Most Differentiated SNPs from Each of the Ancestry-Specific Scans.
| Chr | Pos | Rsid | LLRS | Target Ancestry | Nearest Gene |
|---|---|---|---|---|---|
| 5 | 33951693 | rs16891982 | 22.085902 | European | SLC45A2 |
| 15 | 48426484 | rs1426654 | 19.707464 | European | SLC24A5 |
| 15 | 28356859 | rs1129038 | 19.290553 | European | HERC2 |
| 15 | 28495956 | rs12912427 | 18.270213 | European | HERC2 |
| 9 | 16792200 | rs10962596 | 15.819739 | European | BNC2 |
| 1 | 1385211 | rs1312568 | 15.066101 | European | ATAD3C |
| 2 | 136407479 | rs1446585 | 14.957582 | European | R3HDM1 |
| 2 | 136616754 | rs182549 | 14.629386 | European | MCM6 |
| 1 | 204784969 | rs3940119 | 14.393216 | European | NFASC |
| 4 | 38798648 | rs5743618 | 14.38681 | European | TLR1 |
| 16 | 48258198 | rs17822931 | 23.271759 | CHB | ABCC11 |
| 16 | 48375777 | rs6500380 | 22.474103 | CHB | LONP2 |
| 1 | 234635790 | rs2175591 | 20.95541 | CHB | TARBP1 |
| 4 | 100142780 | rs75721934 | 20.453247 | CHB | LOC100507053 |
| 11 | 61579427 | rs72643557 | 20.114033 | CHB | FADS1 |
| 11 | 120154631 | rs12224052 | 19.696284 | CHB | POU2F3 |
| 21 | 43974948 | rs228088 | 19.518001 | CHB | SLC37A1 |
| 11 | 133043841 | rs79802711 | 19.157192 | CHB | OPCML |
| 5 | 128016573 | rs79478220 | 18.476104 | CHB | FBN2 |
| 19 | 51441759 | rs11084040 | 18.158963 | CHB | KLK5 |
| 14 | 46745012 | rs140736443 | 32.730697 | Native American | LINC00871 |
| 9 | 82968379 | rs6559543 | 27.584847 | Native American | LINC01507 |
| 16 | 80619307 | rs2316155 | 27.399123 | Native American | LINC01227 |
| 14 | 21647765 | rs77549780 | 27.355769 | Native American | LINC00641 |
| 12 | 14189549 | rs12425115 | 25.867367 | Native American | GRIN2B |
| 10 | 8150713 | rs10508343 | 25.609772 | Native American | GATA3 |
| 15 | 34936250 | rs16959274 | 25.424824 | Native American | GOLGA8B |
| 8 | 4490837 | rs71523639 | 24.59957 | Native American | CSMD1 |
| 1 | 14301862 | rs72640512 | 24.455822 | Native American | PRDM2 |
| 12 | 29817716 | rs12580697 | 23.967094 | Native American | TMTC1 |
| 8 | 145639681 | rs1871534 | 11.906794 | Yoruba/Ancestral Non-African | SLC39A4 |
| 5 | 178626609 | rs6869589 | 11.541667 | Yoruba/Ancestral Non-African | ADAMTS2 |
| 15 | 29427400 | rs10152250 | 11.48232 | Yoruba/Ancestral Non-African | FAM189A1 |
| 1 | 1106112 | rs6670693 | 11.447873 | Yoruba/Ancestral Non-African | TTLL10 |
| 4 | 3666494 | rs58827274 | 11.341367 | Yoruba/Ancestral Non-African | LOC100133461 |
| 17 | 2631985 | rs4790359 | 11.118134 | Yoruba/Ancestral Non-African | PAFAH1B1 |
| 9 | 136769888 | rs2789823 | 11.031687 | Yoruba/Ancestral Non-African | VAV2 |
| 6 | 169656029 | rs6930377 | 10.824098 | Yoruba/Ancestral Non-African | THBS2 |
| 17 | 29350769 | rs8073072 | 10.794224 | Yoruba/Ancestral Non-African | RNF135 |
| 5 | 173642871 | rs10067518 | 10.787147 | Yoruba/Ancestral Non-African | HMP19 |
LLRS = log-likelihood ratio score for positive selection.