Table 1.
Statistical data summary of the USDA_OmykA_1.1 (Arlee) rainbow trout genome assembly
| Feature | Canu contigs | Polished contigs | BioNano scaffolds | Hi-C scaffolds | With linkage information |
|---|---|---|---|---|---|
| Number of sequences | 1,591 | 1,591 | 1,044 | 919 | 938 |
| Total length | 2,340,653,759 | 2,341,478,269 | 2,341,947,072 | 2,342,042,072 | 2,341,652,372 |
| Maximum length | 63,126,076 | 63,163,333 | 88,429,459 | 90,526,592 | 88,429,459 |
| Minimum length | 1,061 | 1,057 | 16,956 | 16,956 | 16,956 |
| N50 | 9,835,815 | 9,837,718 | 28,011,862 | 47,542,702 | 39,165,350 |
| L50 | 58 | 58 | 31 | 17 | 22 |
| N90 | 1,125,404 | 1,125,715 | 1,804,217 | 2,489,804 | 2,487,114 |
| L90 | 333 | 333 | 170 | 98 | 116 |
| BUSCO* |
C: 95.9% (S: 48.3%; D: 47.6%) |
C: 96.2% (S: 46.2%; D: 50.0%) |
NA |
C: 96.4% (S: 46.7%; D: 49.7%) |
NA |
*
Benchmarking Universal Single-Copy Orthologs. C: Percent of complete protein-coding genes detected. S: Percent in Single copy. D: Percent of Duplicated genes.