Summary of all FgLy6s identified by BLAST similarity to known F. hepatica and S. mansoni sequences (at E < 1 × 10−5) and presence of uPAR-domain features. FgLy6s were identified across three databases (NEJ transcriptome, adult transcriptome and F. gigantica genome). Signal peptides were predicted using Signal P 5.0. Transmembrane domains were predicted using TmPred. Protein sequence data corresponding with the NEJ transcript IDs are also available in Supplementary Data.
Ly6 | GenBank accession | Sequence length (amino acids) | Signal peptide | C-terminal transmembrane domain | NEJ F. gigantica transcript ID. | Transcriptomic support in adult F. gigantica. | F. gigantica genomic support. | F. hepatica orthologue identified. Δ |
---|---|---|---|---|---|---|---|---|
A | TPP67930 | 127 | + | + | 01777 | + | + | +b |
B | TPP57504 | 122 | + | + | 05428 | + | + | − |
C | TPP61687 | 132 | + | + | 04026 | − | + | +b |
D | TPP58533 | 121 | + | + | 11947 | + | + | +ab |
E | — | 109 | + | − | 11274 | − | − | −* |
F | TPP58767 | 122 | + | + | 05429 | − | + | +b |
G | TPP66235 | 122 | + | + | 11065 | − | + | +b |
H | TPP66236 | 120 | + | + | 14360 | − | + | +b |
I | TPP67438 | 150 | + | + | 10885 | + | + | +ab |
J | TPP56171 | 143 | + | + | 10181 | + | + | +ab |
K | TPP58682 | 152 | + | + | 11200 | + | + | +ab |
L | TPP59839 | 138 | + | + | 01142 | + | + | +ab |
M | TPP61345 | 153 | + | + | 09765 | + | + | +ab |
N | — | 117 | + | + | 02813 | + | + | +ab |
O | TPP67399 | 189 | + | + | 06228 | + | + | +ab |
P | TPP57978 | 127 | − | + | 02241 | + | + | − |
Q | TPP67483 | 129 | + | + | − | + | + | +b |
R | TPP67398 | 197 | + | + | − | + | + | −* |
S | TPP57976 | 166 | − | − | − | + | + | +a |
T | TPP67484 | 121 | + | + | − | − | + | −* |