Key resources table.
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Software, algorithm | R | https://www.r-project.org/ | 3.6.3 and 4.04 | |
Software, algorithm | Python | https://www.python.org/ | D1306 | |
Software, algorithm | DeepPurpose |
https://github.com/kexinhuang12345/DeepPurpose.git; Huang et al., 2021 |
2020 | |
Software, algorithm | Venny | https://bioinfogp.cnb.csic.es/tools/venny/ | 2.10 | |
Software, algorithm | Metascape | http://metascape.org/gp/index.html#/main/step1 | 2020 | |
Software, algorithm | CLUE | https://clue.io/ | March 2020 | |
Software, algorithm | PubChem | https://pubchem.ncbi.nlm.nih.gov/ | December 2020 | |
Software, algorithm | PubMed | https://pubmed.ncbi.nlm.nih.gov/ | December 2020 | |
Software, algorithm | SMS | https://labsyspharm.shinyapps.io/smallmoleculesuite/ | December 2020 | |
Software, algorithm | iLINCS | http://www.ilincs.org/ilincs/signatures/search/ | March 2020 | |
Software, algorithm | Morpheus | https://clue.io/morpheus | 2021 | |
Software, algorithm | Code | Source_code_file.docx | - | R/Python code used in project |