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. 2022 Jan 4;12:789280. doi: 10.3389/fmicb.2021.789280

TABLE 1.

Genomic characterization of 30 ESBL-producing Escherichia coli isolates obtained from human clinical samples in the Eastern Finland healthcare district during 2018–2020.

Sample Sample type Sequence type Serotype fimH type bla gene(s) Plasmid replicon(s) pMLST Year of isolation
D1 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFIB(H89-PhagePlasmid), IncFII(pRSB107), IncX4 [F1:A2:B20] 2020
D2 Joint ST12704 O4:H27 fimH2 bla CTX–M–15 IncFIA, IncFIB, IncFII(pRSB107) [F1:A1:B10] 2018
D3 Scrotum ST38 O1:H15 fimH65 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), Col(BS512), Col156 [F1:A2:B20] 2018
D4 Maxillary sinus ST12703 O18:H7* fimH18 blaCTX–M–14, blaTEM–1 IncFIB [F46:A-:B20] 2018
D5 Eye conjunctiva ST1193 O75:H5 fimH64 bla CTX–M–55 IncB/O/K/Z, Col(BS512), Col(MG828) – 2019
D6 Wound ST131 O25:H4 fimH30 blaCTX–M–15, blaTEM–1 IncFIA, IncFIB, IncFII(pRSB107), Col156 [F1:A2:B20] 2019
D7 Blood ST131 O25:H4 fimH30 blaCTX–M–15, blaOXA–1 No plasmid replicons found – 2019
D8 Bile ST131 O16:H5 fimH41 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), IncX3, IncY, Col(BS512), Col156 [F1:A2:B20] 2019
D9 Abscess ST12705 O16:H5 fimH41 blaCTX–M–15, blaTEM–1 IncFIB, IncFIB(H89-PhagePlasmid), IncFII(29), IncFII(pCoo) [F29:A-:B10] 2019
D10 Blood ST131 O25:H4 fimH30 bla CTX–M–15 IncFIA, IncFIB, Col(BS512) [F36:A1:B20]** 2019
D11 Lung (bronchoalveolar lavage) ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), Col156 [F1:A2:B20] 2019
D12 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), IncI1 [F1:A2:B20] 2020
D13 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncB/O/K/Z, IncFIA, IncFIB, IncFII, IncFII(pRSB107), Col156, Col8282 [F84:A2:B20]** 2019
D14 Blood ST162 O8:H19 fimH32 bla SHV–12 IncFIA, IncFIC(FII), IncI1, IncQ1 [F18:A6:B-]**/ST26 CC-2 2019
D15 Urine ST131 O25:H4 fimH30 bla CTX–M–15 IncFII, IncI1 [F2:A-:B-]/ST173 2019
D16 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), Col156 [F1:A2:B20] 2019
D17 Abdominal cavity ST537 O75:H5 fimH5 bla TEM–52 IncI1 ST36/CC-3** 2019
D18 Urine ST59 O1:H7 fimH41 blaCTX–M–55, blaTEM–1 IncFII(pCoo) [F10:A-:B-] 2019
D19 Urine ST405 O2:H4 fimH56 bla CTX–M–3 IncFIB, IncFII(29), IncI1, Col(BS512), Col156, Col156, Col156 [F29:A-:B10]/ST57 CC-5 2019
D20 Blood ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), Col156 [F1:A2:B20] 2020
D21 Blood ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107) [F1:A2:B20]** 2020
D22 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, Col(pHAD28), Col156 [F-:A2:B20] 2020
D23 Wound ST131 O25:H4 fimH30 bla CTX–M–15 IncFIA, IncFIB, Col(BS512) [F-:A1:B20]** 2020
D24 Urine ST131 O25:H4 fimH30 blaCTX–M–15, blaOXA–1 IncFIA, IncFIB, IncX4, Col156 [F-:A2:B20] 2020
D25 Blood ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB [F-:A2:B20] 2020
D26 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFIB(H89-PhagePlasmid), IncFII(pRSB107), IncI1 [F1:A2:B20]/IncI1 unknown 2020
D27 Blood ST131 O25:H4 fimH30 bla CTX–M–15 IncFIA, IncFIB, Col(BS512) [F22:A1:B20]** 2020
D28 Blood ST131 O16:H5 fimH41 blaCTX–M–15, blaTEM–1 IncFIB, IncFII(29), Col156 [F29:A-:B10] 2020
D29 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, IncFII(pRSB107), Col156 [F1:A2:B20] 2020
D30 Urine ST131 O25:H4 fimH30 bla CTX–M–27 IncFIA, IncFIB, Col(pHAD28), Col156 [F-:A2:B20] 2020

*SerotypeFinder 2.0 (Center for Genomic Epidemiology) used to verify result.

**Uncertain hit, ST cannot be trusted.