| Gene (Helianthus annuus) |
HaMYB111
|
INRA Sunflower Bioinformatics Resources |
HanXRQChr15g0465131
|
|
| Gene (H. annuus) |
HaFLS1
|
INRA Sunflower Bioinformatics Resources |
HanXRQChr09g0258321
|
|
| Gene (H. annuus) |
HaEF1α
|
INRA Sunflower Bioinformatics Resources |
HanXRQChr11g0334971
|
|
| Gene (Arabidopsis thaliana) |
AtMYB111; PFG3
|
The Arabidopsis Information Resource |
At5G49330
|
|
| Gene (A. thaliana) |
AtMYB12; PFG1
|
The Arabidopsis Information Resource |
At2G47460
|
|
| Strain, strain background (Helianthus spp.) |
Various Helianthus species and individuals |
USDA, North Central Regional Plant Introduction Station |
|
See Figure 1—source data 1 for full list |
| Strain, strain background (A. thaliana) |
Col-0 |
Arabidopsis Biological Resource Center |
CS28167 |
|
| Genetic reagent (A. thaliana) |
myb111
|
Arabidopsis Biological Resource Center |
CS9813 |
|
| Genetic reagent (A. thaliana) |
myb12
|
Arabidopsis Biological Resource Center |
CS9602 |
|
| Genetic reagent (A. thaliana) |
myb12/myb111
|
Arabidopsis Biological Resource Center |
CS9980 |
|
| Recombinant DNA reagent |
p35SCaMV::
HaMYB111
large
|
This paper |
|
HaMYB111 CDS from sunflower lines with large LUVp, constitutive promoter |
| Recombinant DNA reagent |
p35SCaMV::
HaMYB111
small
|
This paper |
|
HaMYB111 CDS from sunflower lines with small LUVp, constitutive promoter |
| Recombinant DNA reagent |
pAtMYB111::
HaMYB111
large
|
This paper |
|
HaMYB111 CDS from sunflower lines with large LUVp, endogenous Arabidopsis promoter |
| Recombinant DNA reagent |
pAtMYB111::
HaMYB111
small
|
This paper |
|
HaMYB111 CDS from sunflower lines with small LUVp, endogenous Arabidopsis promoter |
| Sequence-based reagent |
HaMYB111 CDS F |
This paper |
PCR primer |
ATGGGAAGGACCCCGTGTT |
| Sequence-based reagent |
HaMYB111 CDS R |
This paper |
PCR primer |
TTAAGACTGAAACCATGCATCTACC |
| Sequence-based reagent |
AtMYB111 promoter F |
This paper |
PCR primer |
CCTGTGCTTTAAGGCTCGAC |
| Sequence-based reagent |
AtMYB111 promoter R |
This paper |
PCR primer |
TGCTTCTCGGTCTCTTCTGT |
| Sequence-based reagent |
HaMYB111 qPCR F |
This paper |
PCR primer |
ATGGGAAGGACCCCGTGTT |
| Sequence-based reagent |
HaMYB111 qPCR R |
This paper |
PCR primer |
GCAACTCTTTCCGCATCTCA |
| Sequence-based reagent |
HaFLS1 qPCR F |
This paper |
PCR primer |
AAACTACTACCCACCATGCC |
| Sequence-based reagent |
HaFLS1 qPCR R |
This paper |
PCR primer |
TCCTTGTTCACTGTTGTTCTGT |
| Sequence-based reagent |
EF1α qPCR F |
This paper |
PCR primer |
GTGTGTGATGTCGTTCTCCA |
| Sequence-based reagent |
EF1α qPCR R |
This paper |
PCR primer |
ATTCCACCCAAAGCTTGCTC |
| Commercial assay or kit |
CloneJET PCR cloning kit |
Thermo Fisher Scientific |
Cat. #: K1231 |
|
| Commercial assay or kit |
Custom TaqMan SNP Genotyping Assay |
Thermo Fisher Scientific |
Assay ID: ANKCD29 |
|
| Commercial assay or kit |
TaqMan Genotyping Master Mix |
Thermo Fisher Scientific |
Cat. #: 4371355 |
|
| Commercial assay or kit |
RevertAid RT Reverse Transcription Kit |
Thermo Fisher Scientific |
Cat. #: K1691 |
|
| Commercial assay or kit |
SsoFast EvaGreen Supermix |
Bio-Rad |
Cat. #: 1725201 |
|
| Peptide, recombinant protein |
Phusion High-Fidelity DNA Polymerase |
Thermo Fisher Scientific |
Cat. #: F530L |
|
| Chemical compound, drug |
PPM (Plant Preservative Mixture) |
Plant Cell Technologies |
|
|
| Chemical compound, drug |
TRIzol Reagent |
Thermo Fisher Scientific |
Cat. #: 15596026 |
|
| Software, algorithm |
ImageJ |
ImageJ (https://imagej.nih.gov/ij/) |
RRID:SCR_003070
|
v2.0.0-rc-43/1.51o |
| Software, algorithm |
Trimmomatic |
Usadel lab (http://www.usadellab.org/cms/?page=trimmomatic) |
RRID:SCR_011848
|
v0.36 |
| Software, algorithm |
NextGenMap |
NextGenMap (https://cibiv.github.io/NextGenMap/) |
RRID:SCR_005488
|
v0.5.3 |
| Software, algorithm |
GATK |
Broad Institute (https://gatk.broadinstitute.org/hc/en-us) |
RRID:SCR_001876
|
v4.0.1.2 |
| Software, algorithm |
Beagle |
University of Washington (https://faculty.washington.edu/browning/beagle/beagle.html) |
RRID:SCR_001789
|
10 Jun 18.811 |
| Software, algorithm |
BWA |
BWA (https://github.com/lh3/bwa) |
RRID:SCR_010910
|
v0.7.17 |
| Software, algorithm |
EMMAX |
University of Michigan – Center for Statistical Genetics (http://csg.sph.umich.edu//kang/emmax/download/index.html) |
|
v07 Mar 2010 |
| Software, algorithm |
GEMMA |
GEMMA (https://github.com/genetics-statistics/GEMMA) |
|
v0.98.3 |
| Software, algorithm |
GCTA_GREML |
GCTA (https://cnsgenomics.com/software/gcta) |
|
v1.93.2beta |
| Software, algorithm |
BOLT-REML |
BOLT-LMM (https://alkesgroup.broadinstitute.org/BOLT-LMM/BOLT-LMM_manual.html) |
|
v.2.3.5 |
| Software, algorithm |
Agilent MassHunter |
Agilent (https://www.agilent.com/en/promotions/masshunter-mass-spec) |
RRID:SCR_015040
|
|
| Software, algorithm |
R |
The R Project for Statistical Computing(https://www.r-project.org/) |
RRID:SCR_001905
|
v3.6.2 |
| Software, algorithm |
‘raster’ package |
Spatial Data Science (https://rspatial.org/raster/index.html) |
|
|
| Software, algorithm |
‘interactions’ package |
CRAN (https://cran.r-project.org/web/packages/interactions/) |
|
v1.1.5 |
| Software, algorithm |
BayPass |
BayPass (http://www1.montpellier.inra.fr/CBGP/software/baypass/) |
|
v2.1 |
| Software, algorithm |
Fluke Connect |
Fluke (https://www.fluke.com/en-ca/products/fluke-software/connect) |
|
v.1.1.536.0 |
