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. 2021 Dec 16;7(12):000730. doi: 10.1099/mgen.0.000730

Table 2.

List of sequences used for metabarcoding and target PCRs to screen blood, tissue and tick samples for bacteria

References: 1, Gofton et al. [17]; 2, Turner et al. [144]; 3, Lopez et al. [145]; 4, Caporaso et al. [146]; 5, Beard et al. [147]; 6, Anderson et al. [148]; 7, Paddock et al. [149]; 8, Kawahara et al. [82]; 9, Beati and Keirans 2001 [42].

Primer

Sequence (5′−3′)

Reference

Bacteria 16S rRNA

27F-Y

AGAGTTTGATCCTGGCTYAG

[1]

338R

TGCTGCCTCCCGTAGGAGT

[2]

338F

ACTCCTACGGGAGGCAGCAG

[3]

806R

GGACTACHVGGGTWTCTAAT

[4]

Bartonella 16S rRNA/ITS

438s

GGTTTTCCGGTTTATCCCGGAGGGC

[5]

1100as

GAACCGACGACCCCCTGCTTGCAAAGC

[5]

Anaplasmataceae 16S rRNA

EC9

TACCTTGTTACGACTT

[6]

EC12

TGATCCTGGCTCAGAACGAACG

[7]

A171a

GCGGCAAGCCTCCCACAT

[8]

IS58-1345r

CACCAGCTTCGAGTTAAACC

[8]

Ixodida 12S rRNA

T1B

AAACTAGGATTAGATACCCT

[9]

T2A

AATGAGAGCGACGGGCGATGT

[9]