Table 4.
The assignments of 15501 validation isolates by ShigEiFinder and Shigatyper
|
ShigEiFinder assignment |
ShigaTyper assignment |
Total |
|||
|---|---|---|---|---|---|
|
Agreement with ShigEiFinder |
Discrepant with ShigEiFinder |
||||
|
EIEC |
Non-assignment* |
||||
|
SS |
1515 |
0 |
7465 |
19 |
8999 |
|
SF |
4644 |
0 |
117 |
71 |
4832 |
|
C1 and C2 (SB and SD) |
1004 |
0 |
17 |
151 |
1172 |
|
SB12 |
4 |
0 |
0 |
2 |
6 |
|
SB13 |
1 |
0 |
0 |
0 |
1 |
|
SB13-atypical |
2 |
0 |
0 |
0 |
2 |
|
SD1 |
80 |
0 |
244 |
2 |
326 |
|
SD8 |
2 |
0 |
1 |
0 |
3 |
|
SD10 |
0 |
0 |
0 |
1 |
1 |
|
EIEC |
101 |
1 |
0 |
0 |
102 |
|
Sporadic EIEC lineages |
0 |
1 |
15 |
0 |
16 |
|
Multiple clusters |
0 |
0 |
5 |
2 |
7 |
|
Shigella or EIEC unclustered |
0 |
23 |
11 |
0 |
34 |
|
Total |
7353 |
25 |
7875 |
248 |
15501 |
*Non-assignment: multiple wzx genes and non-prediction.