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. 2021 Dec 7;7(12):000694. doi: 10.1099/mgen.0.000694

Fig. 2.

Fig. 2.

Outline flowchart of SNPPar. Inputs are across the top (reference genome, SNP alignment, phylogenetic tree). The first steps involve SNP sorting (blue boxes), then ancestral state reconstruction (green boxes), and finally collation and functional annotation of mutation events (gold boxes). Final outputs are indicated in grey (list of mutation events, and tree file annotated with these events).