TABLE 1.
Characteristics of seven genomic regions (GRs) presented among dominant Elizabethkingia anophelis strains but not among nondominant strains
| Genomic region | Start | End | Size (nt) | Features |
|---|---|---|---|---|
| GR1 | 555,248 | 645,046 | 89,799 | ICEEaIII; Mobile element protein, putative outer membrane protein, Single-stranded DNA-binding protein, DNA topoisomerase III (EC 5.99.1.2), RNA-directed DNA polymerase (Reverse transcriptase), Phage protein, Peptidase, M23/M37 family |
| GR2 | 989,660 | 1,027,265 | 37,606 | Prolyl oligopeptidase family serine peptidase, MFS transporter, porin, response regulator, alkyl hydroperoxide reductase, peptidase M61, insulinase family protein, IS3 family transposase |
| GR3 | 1,437,987 | 1,477,787 | 39,801 | Mobilization protein BmpH, ISSod13, transposase, CMP/dCMP deaminase, zinc-binding |
| GR4 | 1,679,590 | 1,741,370 | 61,781 | Type II, N-methyl DNA methyltransferase (group alpha), T4CP, conjugative transposon protein Tra(G, J, K, M, N), Two-component transcriptional response regulator-LuxR family, RND efflux system, prophage pi2 protein 34 |
| GR5 | 3,273,455 | 3,308,711 | 35,257 | N-acetylmuramoyl-l-alanine amidase, Phage protein, RNA-directed DNA polymerase (Reverse transcriptase) |
| GR6 | 3,689,204 | 3,779,399 | 90,196 | ICEEaI; Tetracycline resistance element mobilization regulatory protein RteC, DNA topoisomerase III, Bacteroidales-type, Putative DNA methylase, TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, Mn-dependent transcriptional regulator MntR, Alpha-acetolactate decarboxylase, Manganese ABC transporter, UDP-2,3-diacylglucosamine diphosphatase, Phosphoglycerate mutase, Methionine aminopeptidase, Ribonucleotide reductase of class Ia (aerobic), Peptide deformylase, Cytosol aminopeptidase PepA, Alkyl hydroperoxide reductase protein C, Superoxide dismutase [Fe], Transcriptional regulator, AraC family, Heterodimeric efflux ABC transporter, 3-oxoacyl-[acyl-carrier protein] reductase, Transcriptional regulator, HxlR family, Porin, Thioredoxin, type 12 methyltransferase, Alpha-acetolactate decarboxylase, Rhodanese-like domain protein, MBL-fold metallo-hydrolase superfamily, Transcriptional regulator, Crp/Fnr family, ThiF family protein, ubiquitin-activating enzyme, Mycobacteriophage Barnyard protein gp56 |
| GR7 | 4,080,427 | 4,134,730 | 54,304 | Phage endolysin, C-5 cytosine-specific DNA methylase, ATP-dependent RNA helicase YejH |