Figure 2.

Sequencing quality control. PCA on normalized binned counts of reads for samples belonging to (A) cohort 1 or (B) cohort 2. (C) PCA on joined cohorts. SNPW (sequencing results from nonpregnant women) samples were added as control. (D) PCA on cohort 1 with addition of three tests samples, two of them resulted from failed alignments to the reference genome and the third correspond to a maternal aneuploidy. Color code: cohort 1, gold; cohort 2, grey; samples from nonpregnant women (SNPW), black; test samples: failed alignments to the reference genome, red and maternal aneuploidy, green.