Table 1.
Results of the original primer blasts against the brown trout genome.
| Gene name | Ensembl ID | Location | Ss4R paralogues | FSGD paralogues |
|---|---|---|---|---|
| acana* | ENSSTUG00000018681 | 29 | ENSSTUG00000037301 (12)* | – |
| bicc2 | ENSSTUG00000000142 | 3 | – | – |
| cldn24 | ENSSTUG00000028911 | 27 | ENSSTUG00000011864 (9) | – |
| csf1r1 | ENSSTUG00000006727 | 3 | ENSSTUG00000003249 (13) | – |
| coch | ENSSTUG00000022865 | 33 | – | – |
| fzd9b | ENSSTUG00000041376 | 13 | ENSSTUG00000022387 (26) | ENSSTUG00000023903 (15) |
| kcnk3a | ENSSTUG00000002375 | 1 | ENSSTUG00000043204 (35) | – |
| melA (opn4b) | ENSSTUG00000008119 | 2 | ENSSTUG00000040347 (10) | – |
| nptx1** | ENSSTUG00000043806 | 14 | ENSSTUG00000021487 (38)** | – |
| pax7a* | ENSSTUG00000008874 | 16 | ENSSTUG00000004759 (14)* | ENSSTUG00000016476 (28) |
| scarb1 | ENSSTUG00000049332 | 23 | ENSSTUG00000023406 (12) | – |
| tmem130 | ENSSTUG00000003928 | 18 | – | – |
| ednrba | ENSSTUG00000006342 | 31 | ENSSTUG00000010807 (21) | – |
| mitfa | ENSSTUG00000014914 | 14 | ENSSTUG00000034903 (16) | ENSSTUG00000032663 (28) and ENSSTUG00000037895 (30) |
| sox10* | ENSSTUG00000036512 | 32 | ENSSTUG00000033003 (1)* | – |
| mc1r | ENSSTUG00000014295 | 29 | ENSSTUG00000020496 (12) | – |
The Ensembl ID of the best hit and primary assembly location (considered as chromosome number) are reported. For paralogues, duplication events (Ss4R/FSGD), Ensembl IDs, and locations (in brackets next to Ensembl ID) are reported. Primers that match both paralogues are marked with ** next to the gene name; * denotes that one of the primers has one or two nucleotide mismatches to other paralogues. In both cases, both paralogues could be potentially amplified in the first qPCR analyses.