TABLE 1.
Isolate name | Accession no. | Run data accession no. | Diagnosis | Sequence constitution method | Total no. of reads | Total no. of mapped reads | Avg coverage (×) | Length (bases) | GC content (%) | Infection typea |
---|---|---|---|---|---|---|---|---|---|---|
Fukushima_H181_2018 | LC651167 | DRR328227 | Acute bronchitis | Assembling | 14,227,470 | 1,009,293 | 26,081.54 | 5,371 | 42.17 | Monoinfection |
Fukushima_H216_2018 | LC651168 | DRR328228 | Acute pneumonia | Assembling | 13,208,520 | 575,157 | 14,809.66 | 5,484 | 42.12 | Monoinfection |
Fukushima_H254_2018 | LC651169 | DRR328229 | Acute pneumonia, febrile convulsion | Assembling | 13,259,719 | 781,149 | 20,516.24 | 5,561 | 42.37 | Monoinfection |
Fukushima_H315_2018 | LC651170 | DRR328230 | Acute bronchitis | Assembling | 26,811,533 | 5,702,012 | 151,634.54 | 5,590 | 42.06 | Monoinfection |
Fukushima_H565_2019 | LC651171 | DRR328231 | Acute bronchitis | Assembling | 8,726,152 | 272,385 | 7,244.30 | 5,596 | 42.61 | Monoinfection |
Fukushima_O210_2018 | LC651172 | DRR328232 | Acute epiglottitis | Assembling | 30,670,275 | 689,693 | 18,204.93 | 5,450 | 42.46 | Monoinfection |
Fukushima_O234_2018 | LC651173 | DRR328233 | Bronchopneumonia | Assembling | 27,303,129 | 45,973 | 1,211.76 | 5,291 | 42.55 | Coinfection with adenovirus 2 |
Fukushima_O278_2018 | LC651174 | DRR328234 | Acute pneumonia | Assembling | 14,346,631 | 2,248,645 | 59,245.02 | 5,472 | 42.27 | Monoinfection |
Fukushima_OR5_2020 | LC651176 | DRR328235 | Acute pharyngitis | Mapping | 9,533,747 | 3,719 | 98.18 | 5,539 | 42.5 | Monoinfection |
Fukushima_OR59_2020 | LC651177 | DRR328236 | Bronchial asthma | Assembling | 62,190,703 | 454,271 | 12,043.63 | 5,501 | 42.46 | Monoinfection |
Fukushima_OR65_2020 | LC651178 | DRR328237 | Pneumonia | Mapping | 13,282,899 | 26,465 | 677.54 | 5,421 | 42.44 | Coinfection with rhinovirus |
Fukushima_OR72_2020 | LC651179 | DRR328238 | Febrile convulsion | Assembling | 10,367,690 | 834,422 | 22,050.27 | 5,490 | 42.69 | Monoinfection |
Fukushima_OR189_2021 | LC651175 | DRR328239 | Intussusception | Assembling | 8,612,873 | 725,001 | 19,253.62 | 5,402 | 42.41 | Monoinfection |
Coinfection was determined by multiplex real-time PCR assays for respiratory viruses (12).