Table 1.
Target Gene | Pathotype | Primer Name | Primer Sequence (5′-3′) | Amplicon Size (bp) |
---|---|---|---|---|
Lambda | Internal Control |
LF | CAGATCTCCAGCACGGAACTATTGAGTACGAACG | 1000 |
LR | GCATAAAATGCGGGGATTCACTGGCTGC | |||
ipaH | EIEC | Ip-F | GATGCCGTGACAGCATGGTTCC | 718 |
Ip-R | CAGCCGGTCAGCCACCCTCTG | |||
Vt1 | EHEC | V1-F | GTCATTCGCCCTGCAATAGGTACTCC | 599 |
V1-R | AGTCTTGTCCATGATAGTCAGGCAGGAC | |||
vt2 | EHEC | V2-F | CGGACAGAGATATCGACCCCTCTTGAAC | 481 |
V2-R | CCTGACGAAATTCTCTCTGTATCTGCCTGAAG | |||
bfpA | EPEC | Bf-F | CAGAATGCTATTTCAGAAGTAATGAGCGCAAC | 400 |
Bf-R | CAGTTGCCGCTTCAGCAGGAGTAATAG | |||
aggR | EAEC | Ag-F | GGTCAAAAGGAATAATTGTAGCTGATGCTGACGAT | 341 |
Ag-R | GCTGCTTTGCTCATTCTTGATTGCATAAGGATCTGG | |||
eaeA | EPEC | Ea-F | CCAGGCTTCGTCACAGTTGCAGGC | 291 |
Ea-R | CGCCACCAATACCTAAACGGGTATTATCACC | |||
stp | ETEC | Sp-F | CCGTGAAACAACATGACGGGAGGTAACATGAAAAAGC | 234 |
Sp-R | GCACAGGCAGGATTACAACAAAGTTCACAGCAG | |||
sth | ETEC | Sh-F | TTCACCTTTCGCTCAGGATGCTAAACCAG | 171 |
Sh-R | AGCACCCGGTACAAGCAGGATTACAACAC | |||
lt | ETEC | Lt-F | GCAGGTTTCCCACCGGATCACCAAGC | 127 |
Lt-R | CAGATTCTGGGTCTCCTCATTACAAGTATCACCTG |