Table 2.
Expression modulation of miRNAs and their putative target genes in Atlantic salmon exposed to GSC and SS.
| Tissue | miRNA | Fold Change GSC | Fold Change SS | De nodo Assembly Contig | Fold Change GSC | Fold Change SS | Delta G | Description |
|---|---|---|---|---|---|---|---|---|
| Gills | ssa-miR-204-5p | −2, 52 | 0 | contig_33389 | 2, 14 | 0 | −12.00 | PREDICTED: serine/threonine-protein kinase WNK2-like isoform X2 [Salmo salar] |
| ssa-miR-19c-3-5p | 3, 04 | 0 | contig_41523 | −2, 29 | 0 | −12.00 | PREDICTED: heat shock 70 kDa protein 12B-like [Salmo salar] | |
| ssa-miR-214-5p | −1, 51 | 0 | contig_50634 | 2, 59 | 0 | −12.00 | PREDICTED: creatine kinase S-type, mitochondrial isoform X1 [Salmo salar] | |
| ssa-miR-214-5p | −1, 51 | 0 | contig_29197 | 2, 47 | 0 | −12.20 | PREDICTED: MAPK/MAK/MRK overlapping kinase-like isoform X1 [Salmo salar] | |
| ssa-miR-199a-3p | −1, 52 | 0 | contig_12464 | 2, 54 | 0 | −12.00 | PREDICTED: interleukin-20 receptor subunit beta-like [Salmo salar] | |
| ssa-miR-19c-3-5p | 3, 04 | 0 | contig_3735 | −2, 11 | 0 | −12.00 | PREDICTED: myosin light chain kinase, smooth muscle-like isoform X3 [Salmo salar] | |
| ssa-miR-456-5p | 0 | 8, 79 | contig_63289 | 0 | −3, 32 | −12.00 | PREDICTED: fibroblast growth factor 10-like [Salmo salar] | |
| ssa-miR-150-3p | 0 | −1, 6 | contig_15517 | 0 | 2, 02 | −12.10 | ATPase inhibitor, mitochondrial precursor [Salmo salar] | |
| ssa-miR-19d-5p | 0 | −2, 68 | contig_13064 | 0 | 2, 07 | −12.00 | ATP-binding cassette sub-family F member 2 [Salmo salar] | |
| ssa-miR-222b-5p | 0 | −1, 98 | contig_78633 | 0 | 3, 86 | −12.00 | transposase [Salmo salar] | |
| ssa-miR-204-5p | −2, 52 | 0 | contig_66355 | 2, 96 | 0 | −12.00 | transposase [Salmo salar] | |
| ssa-miR-18b-5p | 0 | 1, 56 | contig_19956 | 0 | −17, 31 | −12.00 | PREDICTED: haptoglobin-like [Salmo salar] | |
| ssa-miR-456-5p | 0 | 8, 79 | contig_9077 | 0 | −3, 2 | −12.00 | SPATA5 [Salmo salar] | |
| ssa-miR-456-5p | 0 | 8, 79 | contig_52147 | 0 | −2, 72 | −12.10 | PREDICTED: MAPK/MAK/MRK overlapping kinase-like isoform X3 [Salmo salar] | |
| ssa-miR-456-5p | 0 | 8, 79 | contig_32835 | 0 | −2, 64 | −12.00 | interleukin-17A/F3 [Salmo salar] | |
| Intestine | ssa-miR-25-3-5p | 4, 02 | 0 | contig_19100 | −2, 43 | 0 | −30.60 | PREDICTED: non-syndromic hearing impairment protein 5-like isoform X2 [Salmo salar] |
| ssa-miR-30a-3-3p | 0 | 2, 28 | contig_58533 | −3, 12 | 0 | −30.50 | PREDICTED: kynureninase-like [Salmo salar] | |
| ssa-miR-92b-3p | 0 | 1, 22 | contig_2303 | 2, 07 | 0 | −30.40 | PREDICTED: coronin-1B-like [Salmo salar] | |
| ssa-miR-214-5p | 0 | 1, 35 | contig_3322 | 2, 75 | 0 | −30.10 | PREDICTED: fibroblast growth factor receptor substrate 2-like [Salmo salar] | |
| ssa-miR-19c-5p | −2, 06 | 0 | contig_51580 | 3, 29 | 0 | −30.10 | PREDICTED: protein-tyrosine kinase 6-like [Salmo salar] | |
| ssa-miR-92a-5p | 3, 72 | 0 | contig_4409 | −4, 12 | 0 | −30.00 | PREDICTED: dihydropyrimidinase-related protein 4-like [Salmo salar] | |
| ssa-miR-125b-5p | 0 | 1, 26 | contig_4543 | 0 | −1, 97 | −29.80 | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Salmo salar] | |
| ssa-miR-30a-3-3p | 0 | 2, 28 | contig_3114 | 0 | −1, 94 | −29.00 | PREDICTED: free fatty acid receptor 3-like [Salmo salar] | |
| ssa-miR-30a-3p | −1, 73 | 0 | contig_44524 | 2, 17 | 0 | −29.00 | PREDICTED: annexin A2-like [Salmo salar] | |
| ssa-miR-92a-5p | 3, 72 | 0 | contig_51439 | −3, 15 | 0 | −28.90 | PREDICTED: myosin heavy chain, fast skeletal muscle-like [Salmo salar] | |
| ssa-miR-15a-3p | 1, 72 | 0 | contig_9149 | −2, 1 | 0 | −28.40 | PREDICTED: annexin A2-like [Salmo salar] | |
| ssa-miR-140-3p | −1, 53 | 0 | contig_25304 | 4, 52 | 0 | −28.40 | PREDICTED: leucine-rich repeat-containing protein 58-like [Salmo salar] | |
| ssa-miR-456-3p | 3, 35 | 0 | contig_24874 | −1, 73 | 0 | −17.60 | PREDICTED: sialic acid-binding Ig-like lectin 5 [Salmo salar] | |
| ssa-let-7i-5p | 0 | 5, 51 | contig_66659 | 0 | −1, 37 | −16.80 | PREDICTED: dedicator of cytokinesis protein 3-like, partial [Salmo salar] | |
| ssa-let-7d-5p | 4 | 0 | contig_28976 | −5, 05 | 0 | −16.00 | PREDICTED: fibroblast growth factor receptor substrate 2-like [Salmo salar] | |
| Head kidney | ssa-miR-8157-3p | 0 | −2, 18 | contig_122554 | 0 | 6, 77 | −30.20 | PREDICTED: E3 ubiquitin-protein ligase TRIP12-like isoform X1 [Salmo salar] |
| ssa-miR-128-1-5p | −1, 57 | 0 | contig_72217 | 6, 3 | 0 | −29.60 | SPATA5 [Salmo salar] | |
| ssa-miR-214-3p | 0 | 1, 8 | contig_21752 | 0 | −1, 47 | −29.50 | PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 isoform X1 [Salmo salar] | |
| ssa-miR-8157-3p | 0 | −2, 18 | contig_46746 | 0 | 1, 67 | −29.50 | PREDICTED: phospholipid-transporting ATPase 11C-like isoform X1 [Salmo salar] | |
| ssa-miR-205a-5p | 0 | 1, 99 | contig_45675 | 0 | −1, 03 | −29.40 | PREDICTED: von Willebrand factor A domain-containing protein 7-like [Salmo salar] | |
| ssa-miR-214-3p | 0 | 1, 8 | contig_95191 | 0 | −1, 84 | −28.90 | PREDICTED: fibrinogen beta chain-like [Salmo salar] | |
| ssa-miR-194a-3p | 7, 34 | 0 | contig_28663 | −3, 31 | 0 | −28.60 | PREDICTED: laminin subunit alpha-4-like isoform X1 [Salmo salar] | |
| ssa-miR-462a-3p | −1, 86 | 0 | contig_22955 | 2, 08 | 0 | −34.50 | PREDICTED: 3-keto-steroid reductase-like isoform X2 [Salmo salar] | |
| ssa-miR-122-5p | 0 | 3, 15 | contig_68369 | 0 | −1, 89 | −29.80 | PREDICTED: transcription factor E2F7-like [Salmo salar] | |
| ssa-miR-125a-5p | 0 | 2, 32 | contig_31191 | 0 | −1, 03 | −27.70 | PREDICTED: tectonic-2 [Salmo salar] | |
| ssa-miR-449a-5p | 21, 47 | 0 | contig_44769 | −2, 24 | 0 | −20.40 | PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like isoform X1 [Salmo salar] | |
| ssa-miR-192b-5p | 13, 39 | 0 | contig_65873 | −2, 18 | 0 | −20.00 | PREDICTED: E3 ubiquitin-protein ligase RNF144A-like [Salmo salar] | |
| ssa-miR-212a-5p | −1, 83 | 0 | contig_49183 | 2, 56 | 0 | PREDICTED: collagen EMF1-alpha-like [Salmo salar] |