Table 1.

Statistics of the MD2 v2 pineapple genome assembly and gene prediction.

	MD2 v2 P0			MD2 v2 P1
	#	Length [bp]	%	#	Length [bp]	%
Assembly feature
Sequences	63	543,505,080	96.5 */101.0 **	63	531,615,398	94.4 */98.8 **
Contigs	812	543,433,016	96.5 */101.0 **	805	531,544,088	94.4 */98.8 **
Max. sequence length		43,498,842			42,511,760
Min. contig length		5678			4092
Max. contig length		5,969,083			5,971,173
Contig N50 length		1,524,720			1,521,169
Scaffold N50 length		21,996,178			23,016,244
Chromosome-anchored sequence		541,772,120	99.7		529,885,665	99.7
Genome annotation
Transposable element content		337,179,261	62.0		329,341,567	62.0
Gene models	30,591	35,382,141		29,550	34,906,836
Genes in pseudomolecules	30,590	35,382,088	100	29,550	34,906,836	100

* Estimated genome size of 563 Mb. ** Estimated genome size of 526 Mb. # indicates number of sequences for a given metric.