Table 2.
Assembly statistical comparisons between MD2 v2 and publicly available pineapple genomes.
| MD2 v2 P0 vs. MD2 v1 | MD2 v2 P0 vs. F153 v7 | MD2 v2 P0 vs. CB5 | |||||||
|---|---|---|---|---|---|---|---|---|---|
| # | Length [bp] | %/Fold Change | # | Length [bp] | %/Fold Change | # | Length [bp] | %/Fold Change | |
| Assembly feature | |||||||||
| Sequences | −8385 | +19,435,418 | +3.5% */+3.6% ** | −3070 | +161,599,861 | +28.7% */+30.7% ** | −40 | +30,269,689 | +5.4% */+5.6% ** |
| Contigs | −20,927 | +33,521,821 | +6.0% */+6.2% ** | −8550 | +168,298,756 | +29.9% */32.0% ** | −1158 | +30,384,325 | +5.4% */+5.6% ** |
| Max. sequence length | +42,211,785 | +33.8 Fold | +26,164,174 | +2.5 Fold | +16,366,087 | +1.6 Fold | |||
| Min. contig length | +5677 | +5678 Fold | +5497 | +30.4 Fold | −6456 | −2.1 Fold | |||
| Max. contig length | +4,742,061 | +4.9 Fold | +4,957,247 | +5.9 Fold | +3,781,837 | +2.7 Fold | |||
| Contig N50 length | +1,467,419 | +26.6 Fold | +1,410,093 | +13.3 Fold | +1,098,024 | +3.6 Fold | |||
| Scaffold N50 length | +21,843,094 | +143.7 Fold | +10,290,687 | +1.9 Fold | +1,817,735 | +1.1 Fold | |||
| Chromosome-anchored sequence * | +541,772,120 | NA | +225,928,334 | +40.1% | +55,160,525 | +9.8% | |||
| Genome annotation | |||||||||
| Transposable element content | +26,531,143 | +2.76% | +136,080,198 | +10.03% | +38,062,886 | +3.76% | |||
| Gene models | +6993 | +7,217,109 | +3567 | +3,729,585 | NA | NA | NA | ||
| Genes in pseudomolecules | NA | NA | +6698 | +6,439,201 | NA | NA | NA | ||
* Estimated genome size of 563 Mb. ** Estimated genome size of 526 Mb. NA indicates cases where data for calculating differences were not available for the published genomes. # indicates number of sequences for a given metric.