Table 1.
Materials analyzed in this study, with details on the host species, classification, and country of isolation as reported in GenBank or in references. Sequences retrieved from GenBank (Dataset I–III) were used for phylogenetic and network analyses. The symbol “ indicates that information is as above in the same column.
| Host Species | Origin | Specimen Code | Assemblage/ Sub-Assemblage (n) |
GenBank Accession Number | Ref. |
|---|---|---|---|---|---|
| SSU_rRNA | |||||
| Rupicapra r. rupicapra | “ | RR6; RR7; RR8; RR9; RR11; RR12 | A(3); E(2); A+E(1) | OL840340-42 | present study |
| Canis lupus | “ | CL1 | D | OL840343 | present study |
| Sus scrofa | “ | SS1-SS4 | A(4) | OL840344 | present study |
| Hystrix cristata | “ | HC1-HC12 | B(12) | OL840345 | present study |
| Dataset I gdh | |||||
| Rupicapra r. rupicapra | “ | RR8 | AIII | OL828750 | present study |
| Sus scrofa | “ | SS1 | AI | OL828751 | present study |
| Rattus rattus | Spain: Canary Islands | G111; G314; G243 | B(1); G(2) | KC855131-33 | Fernández-Álvarez et al., 2014 [22] |
| Cervus elpahus | Poland | JC002 | A | HM150751 | Solarczyk et al., 2012 [23] |
| Cervus elpahus | “ | RDP132 | A | KF443203 | unpublished |
| Capreolus capreolus | “ | CC1; CC2 | A(2) | HQ538714-15 | Solarczyk et al., 2012 [23] |
| Sus scrofa | Croatia | ISSGdA688 | A | sequence not deposited 1 | Beck et al., 2011 [14] |
| Canis lupus | Romania | wolf55 | D | KT327929 | Adriana et al. 2016 [24] |
| Dama dama | “ | deer57 | E | KT327930 | “ |
| Nyctereutes procyonoides | “ | racoondog60 | D | KT327931 | “ |
| Dama dama | Sweden | Swefd164; Sewfd165 | E(1); A(1) | EU769232; JF773754 | Lebbad et al., 2010 [25] |
| Capreolus capreolus | The Netherlands | NLR118 | A | DQ100288 | van der Giessen et al., 2006 [26] |
| Dama dama | Italy | ISSGdA614;(fallow deer 1–7) | AIII(8) | EU637582 | Cacciò et al., 2008 [19] |
| Rupicapra r. rupicapra | “ | 71 | AI | KT270858 | De Liberato et al., 2015 [20] |
| Rupicapra p. ornata | “ | 10 | AIII | KT270859 | “ |
| Dataset II bg | |||||
| Sus scrofa | Italy | SS1; SS4; SS3 | AII(2) D(1) | OL944445-46 | present study |
| Hystrix cristata | “ | HC1; HC2; HC4; HC8; HC11 | B(5) | OL944442-44 | present study |
| Rupicapra r. rupicapra | “ | RR8 | AII | OL944447 | present study |
| Rattus rattus | Spain: Canary Island | G111; G184; G314; G243; G250 |
B(1); G(4) | KC855126-30 | Fernández-Álvarez et al., 2014 [22] |
| Cervus elaphus | Poland | JC002 | A | EU621373; | Solarczyk et al., 2012 [23] |
| Capreolus capreolus | “ | CC2 | A | HQ538713 | Solarczyk et al., 2012 [23] |
| Cervus elaphus | Poland | JT001, JT003 | A(2) | EU216429; EU626198 | unpublished |
| Nyctereutes procyonoides | “ | NP1 | D | HQ538708 | unpublished |
| Sus scrofa | “ | 70; 71; 78; 80; 72; 79 | B(6) | KF736108-09; KF736111 | Stojecki et al., 2015 [15] |
| Capreolus capreolus | “ | 69; 77; 101; 82; 104 | B(5) | KF736107; KF736112-13 | “ |
| Canis lupus | “ | 22 | D | KF736103 | “ |
| Cervus elaphus | “ | 59, 66; 64; 75 | B(4) | KF736104; KF736106; KF736110 | “ |
| Rattus norvergicus | Sweden | Swerat195 | G | EU769221 | Lebbad et al., 2010 [25] |
| Dama dama | “ | Swefd165 | A | JF773749 | “ |
| Vulpes vulpes | Norway | BG-fox-03-130 | A | DQ904426 | Hamnes et al., 2007 [27] |
| Rangifer tarandus | “ | (reindeer 1–6) | A(6) | sequence not deposited 2 | Robertson et al., 2007 [13] |
| Alces alces | “ | (moose) | A | sequence not deposited 2 | “ |
| Alces alces | “ | BG-cer1; BG-cer2; BG-cer3; BG-cer4;BG-cer5 | A(5) | DQ648777-81 | “ |
| Capreolus capreolus | Spain | (roe deer 1–7) | AII(7) | sequence not deposited 3 | García-Presedo et al., 2013 [28] |
| Dama dama | Italy | (fallow deer 1–8) | AIII(8) | DQ650649 | Lalle et al., 2007 [18] |
| Procyon lotor | Germany | 31; 45; 48 | BIV(3) | MK359161-63 | Solarczyk et al., 2021 [29] |
| Felis silvestris | Luxembourg | FS1 | B | KX685669 | Solarczyk et al., 2019 [30] |
| Dataset III tpi | |||||
| Sus scrofa | Italy | SS1 | AI | OL944434 | present study |
| Hystrix cristata | “ | HC1; HC2; HC6; | BIV(2); AII(1) | OL944435-37 | present study |
| Rattus rattus | Spain: Canary Island | G111; G9; G82; G114; G128; G243; G247; G250; G283; G184; G314 | B(1); G(10) | KC855111-12; KC855114-16; KC855118-20; KC855122; KC855124-25 | Fernández-Álvarez et al., 2014 [22] |
| Mus musuculus domesticus | “ | G29; G162; G253; G159 | G(4) | KC855113; KC855117; KC855121; KC855123 | “ |
| Cervus elaphus | Poland | JC002 | A | HM150750 | Solarczyk et al., 2012 [23] |
| Cervus elaphus | “ | RDP132 | A | KJ020274 | unpublished |
| Cervus elaphus | Croatia | ISSGdA821 | A | HQ259661 | Beck et al., 2011 [14] |
| Canis aureus moreoticus | “ | ISSGdA831 | B | HQ259662 | “ |
| Rattus norvegicus | Sweden | Swerat195 | G | EU781013 | Lebbad et al., 2010 [25] |
| Dama dama | “ | Swefd164; Swefd165 | E(1); A(1) | EU781016; JF773758 | “ |
| Vulpes vulpes | “ | NMBU-Red fox-39; NMBU-Red fox-47; NMBU-Red fox-50; NMBU-Red fox-66 | B(4) | KY304077-80 | Debenham et al., 2017 [16] |
| Dama dama | Italy | (fallow deer 1–8) | AIII(8) | DQ650648 | Lalle et al., 2007 [18] |