TABLE 1.
List of strains and their F types
| F type | Size of the amplified fragment (kbp) | Species and serotype or biotype | Straina | ||
|---|---|---|---|---|---|
| P1 | 2.3 | Shigella dysenteriae 1 | NCDC1007-71 | ||
| Shigella dysenteriae 1 | UE 31127 | ||||
| Shigella dysenteriae 1 | 3116-95 EK1 | ||||
| Shigella dysenteriae 1 | 3125-5 EK1 | ||||
| Shigella dysenteriae 1 | 3090-2 EK1 | ||||
| Shigella dysenteriae 1 | 3095-10 EK1 | ||||
| P2 | 2.2 | Shigella dysenteriae 2 | NCDC4106-65 | ||
| Shigella dysenteriae 2 | UE 9-88 | ||||
| P3 | 1.6 | Shigella dysenteriae 3 | NCDC3690-75 | ||
| Shigella dysenteriae 3 | UE 13-88 | ||||
| Shigella dysenteriae 3 | UE 30-86 | ||||
| Shigella dysenteriae 3 | UE 60-85 | ||||
| Shigella dysenteriae 3 | Polska 38-4064 | ||||
| Shigella dysenteriae 12 | UE 3-89 | ||||
| Shigella dysenteriae 12 | UE 40-85 | ||||
| Shigella dysenteriae 13 | CDC598-77 | ||||
| Shigella dysenteriae 14 | CDC576-83 (E22383) | ||||
| Shigella dysenteriae 15 | CDCE23507 | ||||
| P4 | 1.6 | Shigella dysenteriae 4 | CIP 52-30 | ||
| Shigella dysenteriae 4 | CIP 67-59 | ||||
| Shigella dysenteriae 4 | UE 21-87 | ||||
| Shigella dysenteriae 4 | UE 29-90 | ||||
| Shigella dysenteriae 4 | UE 40-89 | ||||
| Shigella dysenteriae 5 | NCDC853-58 | ||||
| Shigella dysenteriae 5 | CIP 57-42 | ||||
| Shigella dysenteriae 5 | CIP 58-26 | ||||
| Shigella dysenteriae 6 | CIP 52-32 | ||||
| Shigella dysenteriae 6 | UE 16-89 | ||||
| Shigella dysenteriae 7 | NCDC4788-55 | ||||
| Shigella dysenteriae 7 | CIP 67-60 | ||||
| Shigella dysenteriae 7 | CIP 52-123 | ||||
| Shigella dysenteriae 7 | UE 6-87 | ||||
| Shigella dysenteriae 9 | NCDC2860-74 | ||||
| Shigella dysenteriae 11 | NCDC3873-50 | ||||
| Shigella dysenteriae 12 | NCDC3341-55 | ||||
| Shigella boydii 1 | NCDC6310-65 | ||||
| Shigella boydii 1 | UE 47-90 | ||||
| Shigella boydii 1 | UE 52-89 | ||||
| Shigella boydii 2 | NCDC2854-67 | ||||
| Shigella boydii 2 | UE 2-87 | ||||
| Shigella boydii 2 | UE 51-89 | ||||
| Shigella boydii 3 | NCDC67 | ||||
| Shigella boydii 3 | CIP 52-50 | ||||
| Shigella boydii 3 | UE 13-87 | ||||
| Shigella boydii 4 | NCDC871-74 | ||||
| Shigella boydii 4 | UE 42-89 | ||||
| Shigella boydii 6 | NCDC3467-56 | ||||
| Shigella boydii 6 | UE 2162 (Ljublian) | ||||
| Shigella boydii 8 | NCDC3073-50 | ||||
| Shigella boydii 8 | UE 14-88 | ||||
| Shigella boydii 10 | NCDC05-74 | ||||
| Shigella boydii 10 | UE 41-89 | ||||
| Shigella boydii 11 | UE 24-90 | ||||
| Shigella boydii 14 | NCDC2770-51 | ||||
| Shigella boydii 14 | UE 18-86 | ||||
| Shigella boydii 14 | UE 44-89 | ||||
| Shigella boydii 18 | Ewing 10163 | ||||
| Shigella boydii 18 | UE 20-87 | ||||
| Shigella boydii 18 | UE 42-90 | ||||
| Shigella boydii 18 | UE 98-8059 | ||||
| Shigella flexneri 6 | NCDC2924-71 | ||||
| P5 | 1.5 | Shigella dysenteriae 8 | NCDC599-52 | ||
| Shigella dysenteriae 8 | CIP 53-134 | ||||
| Shigella dysenteriae 8 | UE 9-86 | ||||
| P6 | 1.6 | Shigella dysenteriae 10 | NCDC2050-52 | ||
| Shigella dysenteriae 10 | CIP 58-27 | ||||
| Shigella dysenteriae 10 | CIP 58-28 | ||||
| P7 | 2.9 | Shigella dysenteriae 13 | CDC2489-78 | ||
| P8 | 1.6 | Shigella boydii 5 | NCDC5393-79 | ||
| Shigella boydii 5 | UE 88-10 | ||||
| Shigella boydii 9 | NCDC73 | ||||
| Shigella boydii 9 | UE 17-87 | ||||
| P9 | 2.5 | Shigella boydii 7 | NCDC2954-72 | ||
| Shigella boydii 7 | UE 52-54 | ||||
| P10 | 1.6 | Shigella boydii 12 | UE 38-87 | ||
| Shigella boydii 12 | UE 98-0297 | ||||
| Shigella flexneri 1 | NCDC1921-71 | ||||
| Shigella flexneri 1 | CIP 52-37 | ||||
| Shigella flexneri 1a | UE London Sc529 | ||||
| Shigella flexneri 1b | NCDC4173-66 | ||||
| Shigella flexneri 2 | UE 140-80 | ||||
| Shigella flexneri 2 | UE 324-89 | ||||
| Shigella flexneri 2a | NCDC2747-71 | ||||
| Shigella flexneri 2b | NCDC97-68 | ||||
| Shigella flexneri 3 | UE 137-80 | ||||
| Shigella flexneri 3b | NCDC2146 | ||||
| Shigella flexneri 3c | NCDC2479 | ||||
| Shigella flexneri 4 | UE 89-80 | ||||
| Shigella flexneri 4 | UE 303-89 | ||||
| Shigella flexneri 4a | NCDC6603-63 | ||||
| Shigella flexneri 4b | NCDC1242 | ||||
| Shigella flexneri 5 | NCDC6154-61 | ||||
| Shigella flexneri 5a | NCDC1170-74 | ||||
| Shigella flexneri 5b | UE Sc541 | ||||
| Shigella flexneri Y | NTCC 4839 | ||||
| P11 | 1.2 | Shigella boydii 13 | NCDC1610-55 | ||
| Shigella boydii 13 | UE London SL624 | ||||
| P12 | 1.9 | Shigella boydii 15 | NCDC965-58 | ||
| Shigella boydii 15 | CIP 58-19 | ||||
| Shigella boydii 15 | UE Dakar80 | ||||
| P13 | 3.2 | Shigella boydii 16 | NCDC3610-54 | ||
| P14 | 3.2 | Shigella boydii 17 | Ewing 3615-53 | ||
| P15 | 1.6 | Shigella flexneri 3a | NCDC2783-71 | ||
| Shigella flexneri X | UE London 667 | ||||
| P16 | 1.5 | Shigella sonnei a | UE 6-86 | ||
| Shigella sonnei a | UE 11359 | ||||
| Shigella sonnei a | UE 11362 | ||||
| Shigella sonnei a | UE 11363 | ||||
| Shigella sonnei a | UE 98-8725 | ||||
| Shigella sonnei d | CIP 66-4 | ||||
| Shigella sonnei d | UE 60-85 | ||||
| Shigella sonnei e | UE 238-87 | ||||
| Shigella sonnei f | UE 68-89 | ||||
| Shigella sonnei f | UE 155-87 | ||||
| Shigella sonnei g | UE 23-88 | ||||
| Shigella sonnei g | UE 250-88 | ||||
| Shigella sonnei g | UE 285-89 | ||||
| P17 | 1.7 | Shigella sonnei e | UE 55-87 | ||
| Shigella sonnei e | UE 94-2558 | ||||
| NAb | —c | Shigella boydii 12 | NCDC266-59 |
a
NCDC, National Centers for Disease Control, Atlanta, Ga.; CIP, Collection de l'Institut Pasteur, Institut Pasteur, Paris, France; UE, Unité des Entérobactéries, Institut Pasteur.
b
NA, not applicable.
c
—, PCR negative.