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. 2022 Jan 3;12:800587. doi: 10.3389/fgene.2021.800587

TABLE 3.

Staphylococcus membrane protein interaction with methyltransferase, colicin protein, and amoxicillin. In the hydrogen bond column, STP, Staphylococcus membrane protein; MT, methyltransferase; COL, colicin protein; AMX, amoxicillin.

Serial number Ligand molecule PatchDock score Hydrogen bonds Hydrogen bonds length (Angstrom)
1 Methyltransferase 14024 STP:LYS36:NZ—MT:GLN286:OE1 3.12548
STP:GLN42:NE2—MT:SER154:O 3.36677
STP:LYS45:NZ—MT:LYS151:O 3.28368
STP:LYS45:NZ—MT:ARG152:O 2.83486
MT:GLN135:NE2—STP:MET34:SD 3.7311
MT:SER154:N—STP:GLN42:OE1 2.89249
MT:ASN252:ND2—STP:LYS45:O 2.9043
STP:HIS37:CE1—MT:GLN166:OE1 3.75744
MT:HIS445:CE1—STP:VAL35:O 2.55974
2 Colicin protein 12790 COL:PRO132:CD—STP:ASP26:OD1 2.24668
3 Amoxicillin 3544 STP:ARG58:NH1—AMX:O 1.67897
AMX:O—STP:LEU51:O 3.26094
AMX:N—STP:PHE55 3.93687