TABLE 3.
Staphylococcus membrane protein interaction with methyltransferase, colicin protein, and amoxicillin. In the hydrogen bond column, STP, Staphylococcus membrane protein; MT, methyltransferase; COL, colicin protein; AMX, amoxicillin.
| Serial number | Ligand molecule | PatchDock score | Hydrogen bonds | Hydrogen bonds length (Angstrom) |
|---|---|---|---|---|
| 1 | Methyltransferase | 14024 | STP:LYS36:NZ—MT:GLN286:OE1 | 3.12548 |
| STP:GLN42:NE2—MT:SER154:O | 3.36677 | |||
| STP:LYS45:NZ—MT:LYS151:O | 3.28368 | |||
| STP:LYS45:NZ—MT:ARG152:O | 2.83486 | |||
| MT:GLN135:NE2—STP:MET34:SD | 3.7311 | |||
| MT:SER154:N—STP:GLN42:OE1 | 2.89249 | |||
| MT:ASN252:ND2—STP:LYS45:O | 2.9043 | |||
| STP:HIS37:CE1—MT:GLN166:OE1 | 3.75744 | |||
| MT:HIS445:CE1—STP:VAL35:O | 2.55974 | |||
| 2 | Colicin protein | 12790 | COL:PRO132:CD—STP:ASP26:OD1 | 2.24668 |
| 3 | Amoxicillin | 3544 | STP:ARG58:NH1—AMX:O | 1.67897 |
| AMX:O—STP:LEU51:O | 3.26094 | |||
| AMX:N—STP:PHE55 | 3.93687 |