Table A1.
Summary statistics for the stepwise quality control and annotation of the five transcriptomes in the present study and the three existing and reanalyzed potamotrygonid transcriptomes.
|
Potamotrygon
motoro |
Potamotrygon leopoldi |
Himantura
leoparda |
Dasyatis
pastinaca |
Pteroplaty
-trygon violacea |
Potamotrygon
motoro a |
Potamotrygon
falkneri b |
Potamotrygon
amandae c |
|
|---|---|---|---|---|---|---|---|---|
| Raw reads | 33.218.150 | 27.144.363 | 30.544.874 | 29.866.375 | 31.603.727 | 38.674.474 | 7.687.715 | 7.269.571 |
| Length | 150 | 100 | 150 | 150 | 100 | 90 | 35-252 | 35-252 |
| Assembled contigs | 1.920.972 | 2.008.981 | 2.229.479 | 697.969 | 3.729.178 | 2.545.786 | 306.784 | 562.924 |
|
Protein sequences
Transdecoder |
13.813.790 | 4.512.397 | 5.886.854 | 2.002.545 | 7.811.707 | 10.054.481 | 2.537.742 | 4.496.691 |
| Annotation contigs in UniProt | 37.583 | 22.400 | 36.133 | 28.976 | 22.064 | |||
| Annotated contifs in UniProt (with expression > 0) | 18.034 | 8157 | 16.859 | 28.976 | 6878 | |||
| Unique UniProt hits | 7120 | 3660 | 6673 | 9949 | 2713 | |||
| Annotated contigs in ToxProt (unfiltered) | 899.886 | 435.270 | 565.171 | 179.645 | 776.647 | 975.812 | 1.047.614 | 407.053 |
|
Total ToxProt hits
(filtered by expression >0, ID, coverage, bit-score) |
776 | 214 | 1229 | 499 | 193 | 388 | 403 | 435 |
|
Unique ToxProt hits
(filtered by expression >0, ID, coverage, bit-score) |
147 | 84 | 160 | 122 | 129 | 154 | 78 | 97 |
| Unique annotated Toxin Families (collapsed on superfamily level where possible) | 53 | 38 | 43 | 44 | 46 | 57 | 33 | 41 |
| Annotated contigs in KEGG | 56 | 24 | 43 | 63 | 22 | 64 | 52 | 57 |
| Annotated unique KEGG Ortholog Group | 19 | 12 | 24 | 26 | 9 | 31 | 24 | 32 |
| Annotated KEGG Pathway | 72 | 68 | 69 | 68 | 43 | 90 | 68 | 80 |
| Annotated KEGG Drugs | 4 | 3 | 1 | 12 | 1 | 4 | 2 | 4 |
| Pathway overlap with HCS | 22 | 22 | 26 | 27 | 16 | 58 | 24 | 26 |