Table 2.
Genomic regions identified by genome-wide association study contributing significantly to beef bull semen attributes. Significant SNP with a p-value of < 0.00001
| Trait | SNP Name | -log10 p-value | rsID | Chromosome | Position |
|---|---|---|---|---|---|
| Volume | BTB-01549373 | 4.01 | No rsID | 2 | 81,679,350 |
| Hapmap48133-BTA-96243 | 4.21 | rs41666488 | 3 | 61,947,686 | |
| ARS-BFGL-NGS-71827 | 4.26 | rs109736826 | 3 | 112,997,892 | |
| ARS-BFGL-NGS-25127 | 4.19 | rs109268478 | 6 | 102,859,342 | |
| Hapmap49899-BTA-18490 | 4.44 | rs41575945 | 27 | 3,495,048 | |
| Concentration | BTB-01963898 | 4.03 | rs43067163 | 1 | 133,936,071 |
| BTA-122016-no-rs | 4.49 | rs41623602 | 3 | 38,811,314 | |
| Hapmap55203-rs29023737 | 4.12 | rs29023737 | 5 | 3,645,270 | |
| Number of Spermatozoa | BTA-110980-no-rs | 4.83 | rs41618035 | 1 | 31,173,269 |
| ARS-BFGL-NGS-101891 | 4.28 | rs109740774 | 6 | 75,137,290 | |
| Hapmap33368-BTA-146079 | 4.25 | rs43567728 | 8 | 89,743,053 | |
| Hapmap44146-BTA-83959 | 4.07 | rs41661101 | 9 | 50,922,485 | |
| ARS-BFGL-NGS-112914 | 4.71 | rs110005257 | 11 | 99,686,154 | |
| ARS-BFGL-NGS-101386 | 4.55 | rs110190516 | 17 | 67,017,094 | |
| ARS-BFGL-NGS-85970 | 4.04 | rs108993490 | 24 | 16,118,203 | |
| Initial Motility | Hapmap48211-BTA-120784 | 4.69 | rs41623436 | 1 | 152,412,536 |
| ARS-BFGL-NGS-74920 | 4.54 | rs109798673 | 2 | 827,626 | |
| BTB-00319289 | 4.13 | rs43526428 | 7 | 73,777,772 | |
| Hapmap59148-ss46527122 | 4.10 | rs29003479 | 11 | 63,430,172 | |
| BTB-01751684 | 4.04 | rs42861585 | 23 | 46,295,105 | |
| Hapmap23061-BTC-074055 | 4.05 | rs109512383 | 25 | 30,964,321 | |
| Post-thaw Motility | Hapmap48211-BTA-120784 | 4.75 | rs41623436 | 1 | 152,412,536 |
| ARS-BFGL-NGS-74920 | 5.63 | rs109798673 | 2 | 827,626 | |
| Hapmap45703-BTA-105835 | 4.10 | rs41611445 | 2 | 82,083,660 | |
| BTB-01323835 | 4.22 | rs42446055 | 4 | 89,708,810 | |
| BTB-01537954 | 4.32 | rs42653645 | 11 | 25,036,830 | |
| ARS-BFGL-NGS-41002 | 4.52 | rs110418161 | 16 | 36,415,574 | |
| ARS-BFGL-NGS-111058 | 4.82 | rs109719529 | 17 | 56,344,620 | |
| Three Hour Post-thaw Motility | Hapmap59148-ss46527122 | 4.50 | rs29003479 | 11 | 63,430,172 |
| ARS-BFGL-NGS-111058 | 4.49 | rs109719529 | 17 | 56,344,620 | |
| Percentage of Normal Spermatozoa | BTA-50285-no-rs | 4.41 | rs41606310 | 1 | 7,669,386 |
| ARS-BFGL-NGS-43775 | 5.94 | rs110964837 | 2 | 73,209,337 | |
| BTA-91078-no-rs | 4.85 | rs41594758 | 3 | 43,031,873 | |
| ARS-BFGL-NGS-25359 | 4.71 | rs109928164 | 5 | 70,049,126 | |
| BTA-74480-no-rs | 4.66 | rs41591913 | 5 | 84,578,337 | |
| BTA-98744-no-rs | 4.68 | rs41666416 | 10 | 68,089,016 | |
| Primary Abnormalities | BTA-115758-no-rs | 4.11 | rs41566683 | 1 | 36,903,496 |
| Hapmap57078-ss46526391 | 4.95 | rs41255529 | 1 | 60,956,897 | |
| ARS-BFGL-NGS-44433 | 4.22 | rs110487590 | 1 | 63,799,085 | |
| BTB-01831345 | 4.51 | rs42940192 | 4 | 10,648,384 | |
| ARS-BFGL-NGS-80666 | 4.05 | rs110425782 | 20 | 68,324,872 | |
| Hapmap42996-BTA-60916 | 4.16 | rs41646489 | 22 | 33,690,494 | |
| Secondary Abnormalities | Hapmap42996-BTA-60916 | 4.28 | rs41646489 | 22 | 33,690,494 |