Table 2. Conserved motifs of PEPC gene family in green plants.
Motifs | Width | Sites | LLR | E-value | Consensus sequence |
---|---|---|---|---|---|
1 | 29 | 109 | 8856 | 4.7e−3069 | RKPSGGIESLRAIPWIFAWTQTRFHLPVW |
2 | 50 | 109 | 14268 | 9.6e−5072 | [VI]KLTMFHGRGG[TS]VGRGGGPTHLAILSQPPDT[IV][HN]GSLRVT[VI]QGEVIEQSFG |
3 | 44 | 108 | 12398 | 9.6e−4364 | SSWMGGDRDGNPRVTPEVTRDVCLLAR[ML]MAANLYFSQIEDLMFE |
4 | 50 | 104 | 13093 | 2.6e−4568 | IQAA[FW]RTDEIRRT[PQ]PTPQDEMRAG[ML]SYFHETIW[KN]G[VL]PKFLRRVDTALKNI |
5 | 37 | 105 | 10252 | 2.1e−3574 | FSI[DE]WY[RL]NRINGKQEVMIGYSDSGKDAGR[LF]SAAWQ[LM][YF] |
6 | 41 | 109 | 10936 | 4.4e−3771 | DVL[DG]TF[HRK]V[IL]AELP[SA]D[SC]FGAY[IV]ISMATAPSDVLAVELLQREC |
7 | 41 | 109 | 10861 | 2.7e−3739 | DF[LM]RQVS[TC]FGLSLV[KR]LDIRQES[DE]RHT[DE]V[LM]DAIT[TN][HY]LGIGSY |
8 | 50 | 109 | 12887 | 1.6e−4467 | WRAL[ML]DE[MI]AVV[AS]T[KE]EYRS[IV]VF[QK][EN]PRFVEYFRLATPELEYGR[ML]NIGSRPSK |
9 | 41 | 108 | 10512 | 6.4e−3599 | [TM]L[QR][EA]MYN[EQ]WPFFRVTIDL[VI]EMVFAKGDP[GR]IAALYDKLLVS[ED] |
10 | 29 | 108 | 7470 | 7.5e−2482 | EEHLCFRTLQR[FY]TAATLEHGMHPPI[SA]PKP |
Notes.
- Width
- the length of motif
- Sites
- the number of sequences including the motif
- LLR
- log likelihood rate
Amino acid residues of experimentally proven function in Wang et al. (2016) are indicated by red majuscules.