TABLE 1.
Characteristics of the viral-isolate panel
| Group | Subtypea | Isolate | Country |
|---|---|---|---|
| M | A | UG273 | Uganda |
| CRF-AG (IbNG) (A/G/A) | DJ258 | Djibouti | |
| CRF-AG (IbNG) (A/G/A) | DJ263 | Djibouti | |
| B | US1 | United States | |
| B | US2 | United States | |
| B | US3 | United States | |
| B | US4 | United States | |
| B/A/B | CM237 | Thailand | |
| B | BK132 | Thailand | |
| B | BZ167 | Brazil | |
| C | ZAM18 | Zambia | |
| C | UG268 | Uganda | |
| C | ETH2220 | Ethiopia | |
| C | SE364 | Senegal | |
| C | SM145 | Somalia | |
| D | SE365 | Senegal | |
| D | UG270 | Uganda | |
| D | UG274 | Uganda | |
| CRF-AE (A/A/E)b | CM235 | Thailand | |
| CRF-AE (A/A/E) | CM238 | Thailand | |
| CRF-AE (A/A/E) | CM240 | Thailand | |
| CRF-AE (A/A/E) | CM243 | Thailand | |
| CRF-AE (A/A/E) | POC30506 | Thailand | |
| CRF-AE (A/A/E) | ID12 | Indonesia | |
| CRF-AE (A/A/E) | ID17 | Indonesia | |
| CRF-AE (A/A/E) | NP1465 | Thailand | |
| F | BZ126 | Brazil | |
| F | BZ162 | Brazil | |
| F | BZ163 | Brazil | |
| G | HH8793 | Kenya | |
| A | UG95-327 | Uganda | |
| A | UG95-422 | Uganda | |
| B | TH1600 | Thailand | |
| C | UG95-175 | Uganda | |
| D | UG95-306 | Uganda | |
| F | BR57 | Brazil | |
| A/G/G | IVCO3671 | Ivory Coast | |
| O | 3012 | Spain | |
| 08692A | United States |
a
Mosaic forms and CRF are listed by subtype of gag/pol/env.
b
Denoted as subtype E by Michael et al. (27).