| Chemicals, consumables and recombinant proteins, and other |
|
| Acrylamide/bisacrylamide, 30% Solution 29:1 |
Sigma-Aldrich |
Cat#A3574 |
| Acrylamide/bisacrylamide, 30% Solution 29:1 |
Sigma-Aldrich |
Cat#A3574 |
| APS |
Sigma-Aldrich |
Cat#A3678 |
| TEMED |
Sigma-Aldrich |
Cat#T9281 |
| Calcium Chloride |
Sigma-Aldrich |
Cat#C4901 |
| Acetic Acid |
ISOLAB |
Cat#901.013.1000 |
| HCl |
ISOLAB |
Cat#932.106.2501 |
| NaOH |
ISOLAB |
Cat#969.112.0500 |
| SDS |
ISOLAB |
Cat#915.02P.0051 |
| Beta Mercaptoethanol (BME) |
Merck |
Cat#8057400250 |
| SDS-PAGE casting system |
Bio-Rad |
Cat#1658015 |
| SDS-PAGE system |
Bio-Rad |
Cat#1658004 |
| Nanodrop 2000c |
Thermo Scientific |
Cat#ND2000C |
| Amicon Ultra 15 mL 10K centrifugal filter unit |
Amicon |
Cat#UFC901024 |
| Kimwipes |
Kimberly-Clark |
Cat#13258179 |
| Innova 44R |
Eppendorf, New Brunswick |
Cat#16524370 |
| Akta Go |
Cytiva |
Cat#29383015 |
| Regenerated Cellulose Dialysis tubing |
Thermo Scientific |
Cat#68100 |
| Tryptone |
Sigma-Aldrich |
T7293-1KG |
| Yeast Extract |
Sigma-Aldrich |
Y1625-1KG |
| IPTG |
GOLDBIO |
Cat#12481C100 |
| Chloramphenicol |
GOLDBIO |
Cat#C-105-100 |
| Kanamycin |
GOLDBIO |
Cat#K-120-100 |
| EDI ultrapure water |
Milli-Q |
Cat#ZR0Q008WW |
| NaCl |
ISOLAB |
Cat#969.036.0500 |
| Glycerol |
ISOLAB |
Cat#927.043.1000 |
| Dithiothreitol (DTT) |
Roche |
Cat#10708984001 |
| Tris |
Sigma-Aldrich |
Cat#93362 |
| Triton X-100 |
Sigma-Aldrich |
Cat#T9284 |
| Ni-NTA Agarose resin |
QIAGEN |
Cat#30250 |
| PreScission |
GenScript |
Cat#Z02799 |
| Terasaki Plate |
Greiner Bio-One |
Cat#654 102 |
| Pact Premier |
Molecular Dimensions |
Cat#MD1-29 |
| Pure Cotton |
Ipek |
N/A |
|
| Bacterial and virus strains |
|
| Rosetta™ 2(DE3) |
Sigma-Aldrich |
Cat#71400-M |
|
| Deposited data |
|
| Monoclinic structure of Mpro at ambient temperature |
Durdagi et al. (2021) |
PDB ID:7CWB
|
|
| Recombinant DNA |
|
| pET28a(+) Construct |
GenScript |
|
|
| Software and algorithms |
|
| PSOCAKE |
Damiani et al. (2016) |
https://github.com/lcls-psana/psocake |
| CHEETAH |
Barty et al. (2014) |
https://github.com/biochem-fan/cheetah |
| CrystFEL |
White et al. (2012) |
https://www.desy.de/∼twhite/crystfel/ |
| CCP4 |
Winn et al. (2011) |
https://www.ccp4.ac.uk/ |
| SnapGene |
GSL Biotech |
https://www.snapgene.com |
| Structure Refinement: PHENIX |
Adams et al. (2010) |
http://www.phenix-online.org/ |
| Structure Modeling: COOT |
Emsley and Cowtan (2004) |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
| PyMOL |
Schrödinger, LLC |
https://pymol.org/2/ |
| Maestro molecular modeling program |
Madhavi Sastry et al. (2013) |
https://www.schrodinger.com/products/maestro |
| PROPKA |
Bas et al. (2008) |
https://pypi.org/project/propka/ |
| R (Bio3D package) |
Grant et al. (2006) and Yao and Grant (2013)
|
https://www.r-project.org/ |