Skip to main content
. 2022 Jan 24;3(1):101158. doi: 10.1016/j.xpro.2022.101158
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, consumables and recombinant proteins, and other

Acrylamide/bisacrylamide, 30% Solution 29:1 Sigma-Aldrich Cat#A3574
Acrylamide/bisacrylamide, 30% Solution 29:1 Sigma-Aldrich Cat#A3574
APS Sigma-Aldrich Cat#A3678
TEMED Sigma-Aldrich Cat#T9281
Calcium Chloride Sigma-Aldrich Cat#C4901
Acetic Acid ISOLAB Cat#901.013.1000
HCl ISOLAB Cat#932.106.2501
NaOH ISOLAB Cat#969.112.0500
SDS ISOLAB Cat#915.02P.0051
Beta Mercaptoethanol (BME) Merck Cat#8057400250
SDS-PAGE casting system Bio-Rad Cat#1658015
SDS-PAGE system Bio-Rad Cat#1658004
Nanodrop 2000c Thermo Scientific Cat#ND2000C
Amicon Ultra 15 mL 10K centrifugal filter unit Amicon Cat#UFC901024
Kimwipes Kimberly-Clark Cat#13258179
Innova 44R Eppendorf, New Brunswick Cat#16524370
Akta Go Cytiva Cat#29383015
Regenerated Cellulose Dialysis tubing Thermo Scientific Cat#68100
Tryptone Sigma-Aldrich T7293-1KG
Yeast Extract Sigma-Aldrich Y1625-1KG
IPTG GOLDBIO Cat#12481C100
Chloramphenicol GOLDBIO Cat#C-105-100
Kanamycin GOLDBIO Cat#K-120-100
EDI ultrapure water Milli-Q Cat#ZR0Q008WW
NaCl ISOLAB Cat#969.036.0500
Glycerol ISOLAB Cat#927.043.1000
Dithiothreitol (DTT) Roche Cat#10708984001
Tris Sigma-Aldrich Cat#93362
Triton X-100 Sigma-Aldrich Cat#T9284
Ni-NTA Agarose resin QIAGEN Cat#30250
PreScission GenScript Cat#Z02799
Terasaki Plate Greiner Bio-One Cat#654 102
Pact Premier Molecular Dimensions Cat#MD1-29
Pure Cotton Ipek N/A

Bacterial and virus strains

Rosetta™ 2(DE3) Sigma-Aldrich Cat#71400-M

Deposited data

Monoclinic structure of Mpro at ambient temperature Durdagi et al. (2021) PDB ID:7CWB

Recombinant DNA

pET28a(+) Construct GenScript

Software and algorithms

PSOCAKE Damiani et al. (2016) https://github.com/lcls-psana/psocake
CHEETAH Barty et al. (2014) https://github.com/biochem-fan/cheetah
CrystFEL White et al. (2012) https://www.desy.de/∼twhite/crystfel/
CCP4 Winn et al. (2011) https://www.ccp4.ac.uk/
SnapGene GSL Biotech https://www.snapgene.com
Structure Refinement: PHENIX Adams et al. (2010) http://www.phenix-online.org/
Structure Modeling: COOT Emsley and Cowtan (2004) https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
PyMOL Schrödinger, LLC https://pymol.org/2/
Maestro molecular modeling program Madhavi Sastry et al. (2013) https://www.schrodinger.com/products/maestro
PROPKA Bas et al. (2008) https://pypi.org/project/propka/
R (Bio3D package) Grant et al. (2006) and Yao and Grant (2013) https://www.r-project.org/