Table 5.
Observed composition of gut mock based on MinKNOW mappings. Species chosen for enrichment are highlighted in bold. Due to the large number of contigs (> 13,000) for C. albicans and S. cerevisiae, these references were not presented to the onboard alignment process, so data is not shown
| Species | Manufacturer’s theoretical abundance (%) | Observed composition by mapped bases (%) | Mean read length |
|---|---|---|---|
| Faecalibacterium prausnitzii | 14 | 19.31 | 3428 |
| Veillonella rogosae | 14 | 15.04 | 14,353 |
| Roseburia hominis | 14 | 10.70 | 4412 |
| Bacteroides fragilis | 14 | 13.26 | 10,334 |
| Prevotella corporis | 6 | 6.50 | 9851 |
| Bifidobacterium adolescentis | 6 | 0.2 | 6699 |
| Fusobacterium nucleatum | 6 | 5.77 | 4928 |
| Lactobacillus fermentum | 6 | 7.38 | 866 |
| Clostridioides difficile | 1.5 | 1.72 | 8835 |
| Akkermansia muciniphila | 1.5 | 2.12 | 8765 |
| Methanobrevibacter smithii | 0.1 | 0.03 | 15,651 |
| Salmonella enterica | 0.01 | 0.03 | 8198 |
| Enterococcus faecalis | 0.0001 | 0.00 | no reads |
| Clostridium perfringens | 0.00001 | 0.00 | no reads |
| Escherichia coli (JM109) | 2.8 | 2.90 | 8782 |
| Escherichia coli (B-3008) | 2.8 | 3.44 | 7034 |
| Escherichia coli (B-2207) | 2.8 | 2.80 | 5895 |
| Escherichia coli (B-766) | 2.8 | 2.84 | 9007 |
| Escherichia coli (B-1109) | 2.8 | 3.10 | 8784 |
| Candida albicans | 1.5 | n/a | n/a |
| Saccharomyces cerevisiae | 1.4 | n/a | n/a |