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. 2022 Jan 10;11:772574. doi: 10.3389/fcimb.2021.772574

Figure 1.

Figure 1

in silico serotyping pipeline workflow. Schematic of in silico serotyping STEC by cluster/serotype-specific genes combined with the ipaH gene, stx genes including all available subtypes and E. coli O antigen and H antigen genes, implemented in STECFinder. Both assembled genomes and raw reads are accepted as data input.