Table 2.

Associations with Braak stage in PART (p < 5.0E − 06, n = 647)

Chr	Base pair	SNP	Genes	A1	Beta	SE	L95	U95	t statistic	p
2	11,935,322	rs78580932	GREB1, NTSR2, LPIN1, MIR4262	C	− 0.54	0.10	−0.76	−0.34	−5.15	3.55E-07
2	235,768,810	rs74600760	ARL4C, SH3BP4	T	− 0.53	0.11	−0.74	−0.32	−4.86	1.48E-06
3	61,518,166	rs111610564	FHIT, PTPRG	C	− 0.49	0.10	−0.70	−0.30	−4.82	1.81E-06
3	140,216,029	rs349509	CLSTN2, CLSTN2-AS1, TRIM42	A	− 0.77	0.16	−1.08	−0.47	−4.97	8.64E-07
3	179,019,705	rs13323081	PIK3CA, KCNMB3, ZNF639, MFN1	G	0.24	0.05	0.15	0.33	5.17	3.16E-07
4	130,085,480	rs56405341	C4orf33, SCLT1, JADE1	A	0.25	0.05	0.16	0.35	5.52	4.82E-08
4	137,329,297	rs77506227	–	A	− 0.79	0.16	−1.12	−0.48	−4.88	1.34E-06
5	150,473,104	rs6579838	GPX3, TNIP1, ANXA6	C	0.23	0.05	0.14	0.32	5.10	4.57E-07
10	124,487,608	rs150945906	DMBT1, C10orf120, DMBT1P1	A	− 0.64	0.14	−0.91	−0.38	−4.77	2.31E-06
15	24,515,682	rs147462127	PWRN2, PWRN1	T	− 0.84	0.17	−1.18	−0.51	−4.98	8.37E-07
15	36,865,219	rs185845364	C15orf41, CSNK1A1P1	G	− 0.79	0.16	−1.11	−0.48	−4.94	9.79E-07
17	1,879,293	rs12946465	RPA1, RTN4RL1, DPH1, OVCA2	C	− 0.21	0.05	−0.31	−0.13	−4.75	2.51E-06
19	45,719,790	rs10415392	TRAPPC6A, BLOC1S3, EXO3L2, MARK4	T	0.34	0.07	0.21	0.48	4.85	1.59E-06
20	56,754,110	rs78923929	C20orf85, PPP4R1L, RAB22A	A	− 0.65	0.13	−0.92	−0.40	−4.95	9.76E-07

Genome-wide significant difference in bold, chr = chromosome, SNP = single nucleotide polymorphism, SE = standard error