Table 5.
Relationships of identified SNV haplotype (t19839-g28881-g28882-g28883) with classifications of Nextstrain and clades by GISAID.
| Hap | caac | taac | cggg | tggg | Rares |
|---|---|---|---|---|---|
| Nextstrain | n = 1201 | 434 | 29 | 5462 | 11 |
| Unspecified | 7 (0.13) | ||||
| 19A | 42 (0.77) | ||||
| 19B | 1 (0.23) | 8 (27.59) | 1422 (26.03) | 1 (9.09) | |
| 20A | 5 (17.24) | 1032 (18.89) | 4 (36.36) | ||
| 20A.EU2 | |||||
| 20B | 1201 (100) | 423 (97.47) | 13 (44.83) | 2 (0.04) | 3 (27.27) |
| 20C | 3 (10.34) | 2005 (36.71) | 3 (27.27) | ||
| 20D | 2 (0.46) | ||||
| 20E (EU1) | 1 (0.02) | ||||
| 20F | |||||
| 20G | 951 (17.41) | ||||
| 20H/501Y.V2 | |||||
| 20I/501Y.V1 | 8 (1.84) | ||||
| 20 J/501Y.V3 | |||||
| GISAID-Clade | |||||
| G | 1 (0.23) | 18 (62.07) | 858 (15.71) | 4 (36.36) | |
| GH | 3 (10.34) | 3131 (57.32) | 3 (27.27) | ||
| GR | 1196 (99.58) | 429 (98.85) | 2 (18.18) | ||
| GV | 1 (0.02) | ||||
| L | |||||
| O | 5 (0.42) | 2 (0.46) | 35 (0.64) | 1 (9.09) | |
| S | 2 (0.46) | 8 (27.59) | 1413 (25.87) | 1 (9.09) | |
| V | 24 (0.44) | ||||