TABLE 3.
Detected genes |
C. jejuni (n = 108) |
C. coli (n = 21) |
||||
Presence | % | Presence | % | |||
Virulence genes | Adhesion | cadF | 108 | 100.00 | – | – |
jlpA | 105 | 97.22 | – | – | ||
racR | 108 | 100.00 | 21 | 100.00 | ||
dnaJ | 108 | 100.00 | – | – | ||
pebA | 108 | 100.00 | – | – | ||
pldA | 106 | 98.15 | – | – | ||
porA | 95 | 87.96 | 14 | 66.67 | ||
Invasion | ceuE | 107 | 99.07 | – | – | |
ciaB | 101 | 93.52 | – | – | ||
iamB | 108 | 100.00 | 4 | 19.05 | ||
flaC | 108 | 100.00 | 21 | 100.00 | ||
Toxins | cdtA | 107 | 99.07 | – | – | |
cdtB | 107 | 99.07 | – | – | ||
cdtC | 107 | 99.07 | – | – | ||
T6SS | tssA-tssM | 61 | 56.48 | 4 | 19.05 | |
tagH | 61 | 56.48 | 4 | 19.05 | ||
hcp | 61 | 56.48 | 4 | 19.05 | ||
T4SS | virB10 | 15 | 13.89 | – | – | |
virB11 | 12 | 11.11 | 3 | 14.29 | ||
virB4 | 12 | 11.11 | 3 | 14.29 | ||
virB9 | 12 | 11.11 | 3 | 14.29 | ||
virD4 | 15 | 13.89 | – | – | ||
LOS | waaC | 107 | 99.07 | 21 | 100.00 | |
htrB | 107 | 99.07 | 6 | 28.57 | ||
glyt | 84 | 77.78 | 16 | 76.19 | ||
cgtA | 24 | 22.22 | – | – | ||
cstII | 38 | 35.19 | – | – | ||
neuB | 40 | 37.04 | – | – | ||
neuC | 37 | 34.26 | 1 | 4.76 | ||
Resistance genes | Fluoroquinolones | gyrA-T86I | 101 | 93.52 | 21 | 100.00 |
gyrA-V149I | 28 | 21.7 | – | – | ||
Multidrug Efflux pump | cmeABC | 101 | 93.52 | – | – | |
Mef(En2) | 1 | 0.93 | – | – | ||
Macrolides | 23S rRNA-A2075G | 13 | 12.04 | 11 | 52.38 | |
Aminoglycosides | aad(6) | 1 | 0.93 | 10 | 47.62 | |
adeF | 1 | 0.93 | – | – | ||
aph(3′)-IIIa | 30 | 27.78 | 11 | 52.38 | ||
aph(2″)-Iia | 12 | 11.11 | 2 | 9.52 | ||
aac(6′)-Im | 1 | 0.93 | 2 | 9.52 | ||
SAT-4 | 6 | 5.56 | 11 | 52.38 | ||
Streptogramins | LsaE | 1 | 0.93 | – | – | |
Tetracyclines | tetO | 72 | 66.67 | 14 | 66.67 | |
tet(W/N/W) | 4 | 3.70 | 4 | 19.05 | ||
Beta-Lactamases | OXA-61 | 72 | 66.67 | 18 | 85.71 | |
OXA-184 | 1 | 0.93 | – | – | ||
cepA | 1 | 0.93 | – | – |