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. 2022 Jan 11;12:787651. doi: 10.3389/fmicb.2021.787651

TABLE 1.

Single amplified genomes (SAGs) and metagenome-assembled genomes (MAGs) identified as GAL08 recovered in this study.

Speciesa Type Assembly size (Mbp) Est. completeness %b Est. Size (Mbp)b Qualityb Est. contamination (%)b IMG Taxon ID
Species 1 MAG 3.08 95.3 3.23 High 2.56 3300025105_19
MAG 3.09 95.3 3.24 High 3.42 3300025775_16
MAG 3.05 93.3 3.28 High 2.56 3300006767
SAG 3.04 92.7 3.28 High 2.56 3300013894
SAG 2.75 89.3 3.08 Medium 1.71 3300014485
MAG 2.90 89.3 3.24 Medium 1.71 3300025094_20
SAG 2.39 74.6 3.20 Medium 2.56 2616644824
SAG 1.93 63.4 2.92 Medium 0.85 3300014036
SAG 1.39 44.0 3.15 Low 0 3300022998
SAG 1.23 36.5 3.36 Low 0 2634166204
SAG 1.03 33.7 3.04 Low 0 3300010608
7 more SAGsa <30%
Species 2 MAG 2.50 69.7 3.08 Medium 5.87 3300006767
SAG 2.50 85.3 2.94 Medium 2.56 2706794759
SAG 2.47 75.9 3.25 Medium 2.75 3300014484
SAG 2.23 70.6 3.16 Medium 2.56 3300014483
SAG 0.78 30.2 2.60 Low 0.85 3300014433
Species 3 MAG 3.28 96.6 3.39 High 2.56 3300025105_14
SAG 2.14 63.6 3.35 Medium 0.85 2706794767
SAG 1.80 62.5 3.15 Medium 0.85 3300014343
MAG 2.01 56.4 3.57 Medium 0.85 3300025094_36
SAG 1.38 47.5 2.89 Low 0 3300014464
SAG 1.87 46.3 4.03 Low 0 2619618948
SAG 1.18 34.3 3.43 Low 0 3300010653
2 more SAGsb <30%

Grouping of SAGs into species was made based on average nucleotide identity (ANI) comparisons (Figure 3). Completeness and contamination were estimated using CheckM (Parks et al., 2015). Quality was assessed as described by Bowers et al. (2017).

aIMG Taxon IDs: 3300013081, 3300010584, 3300010538, 3300010583, 3300014406, 2619618940, and 3300022972.

bIMG Taxon IDs: 3300014405 and 3300014434.