TABLE 2.
SDA primer set | No. of copies needed for amplification of DNA from:
|
||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E. coli | Typhi | C. jejuni | MRSA | C. trachomatis | P. hemo | Enterococcus faecalis | Bacteroides fragilis | Kebsiella oxytoca | Yersinia enterocolitica | Shigella sonnei | Plesiomonas shigelloides | Pseudomonas aeruginosa | S. aureus | Vibrio parahaemolyticus | |
E. coli or Salmonella gyrA | 100 | 100 | — | — | — | — | — | — | — | — | — | — | — | — | — |
Campylobacter gyrA | — | — | 100 | — | — | — | — | — | — | — | — | — | — | — | — |
E. coli parC | 10,000 | — | — | — | — | — | — | — | — | — | — | — | — | — | — |
mecA | — | — | — | 1,000 | — | — | — | — | — | — | — | — | — | — | — |
Chlamydia cryptic plasmid | — | — | — | — | 1,000 | — | — | — | — | — | — | — | — | — | — |
Titration experiments were performed for each anchored SDA system, and images were quantified to determine the lower limit of amplification sensitivity. The number of copies necessary for consistent amplification of template DNA is indicated. Genomic DNA from other bacterial species (100 ng) was also tested with every system to determine the degree of cross-reactivity. Typhi, Salmonella enterica, serovar Typhi; MRSA, methicillin-resistant S. aureus. —, no amplification.