Table 1. Genome data for Rana temporaria, aRanTem1.1.
| Project accession data | |
|---|---|
| Assembly identifier | aRanTem1.1 |
| Species | Rana temporaria |
| Specimen | aRanTem1; NHMUK 2013.483 |
| NCBI taxonomy ID | NCBI:txid8407 |
| BioProject | PRJEB42239 |
| BioSample ID | SAMEA7521635 |
| Isolate information | Female, heart (genome assembly); kidney (Hi-C) |
| Raw data accessions | |
| PacificBiosciences SEQUEL I | ERR7012640-ERR7012642 |
| 10X Genomics Illumina | ERR6002771-ERR6002779, ERR6003050-
ERR6003052 |
| Hi-C Illumina | ERR6002780-ERR6002782 |
| BioNano | ERZ3003200 |
| Genome assembly | |
| Assembly accession | GCA_905171775.1 |
| Accession of alternate haplotype | GCA_905171725.1 |
| Span (Mb) | 4,111 |
| Number of contigs | 2,411 |
| Contig N50 length (Mb) | 6.26 |
| Number of scaffolds | 554 |
| Scaffold N50 length (Mb) | 482 |
| Longest scaffold (Mb) | 691 |
| BUSCO * genome score | C:90.7%[S:88.9%,D:1.8%],F:2.3%,M:6.9%,n:5310 |
| Genome annotation | |
| Number of genes | 36,124 |
| Number of protein-coding genes | 23,707 |
| Average length of gene (bp) | 52,818 |
| Average number of exons per gene | 14 |
| Average exon size (bp) | 273 |
| Average intron size (bp) | 9,757 |
| BUSCO annotation score ** | C:95.2%[S:92.8%,D:2.4%],F:0.6%,M:4.1%,n:5310 |
C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison.
*BUSCO scores based on the terapoda_odb10 BUSCO set using v5.1.2, run on the aRanTem1.1 genome assembly using BlobToolKit. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/aRanTem1.1/dataset/CAJIMO01/busco.
**BUSCO scores based on the terapoda_odb10 BUSCO set using v4.0.2, run on the NCBI RefSeq annotation of the aRanTem1.1 genome assembly ( NCBI Rana temporaria Annotation Release 100).