Table 2.
Top OTUs classified against the HOMD database.
| Rank | OTU ID | Sum of OTUs in all samples | HOMD | Identity (%) |
|---|---|---|---|---|
| 1 | OTU1570 | 169504 | Burkholderia cepacia HMT-571 Strain: ATCC 25416 | 94.923 |
| 2 | OTU1470 | 132710 | Fusobacterium nucleatum subsp. animalis HMT-420 Strain: NCTC 12276 | 99.065 |
| 3 | OTU983 | 79496 | Proteus mirabilis HMT-676 Strain: ATCC 29906 | 95.333 |
| 4 | OTU805 | 76149 | Bifidobacterium breve HMT-889 Strain: ATCC 15700 | 99.08 |
| 5 | OTU1567 | 62369 | Streptococcus oralis subsp. dentisani clade 058 HMT-058 Clone: BW009 | 99.333 |
| 6 | OTU1593 | 35142 | Sphingomonas echinoides HMT-003 Clone: nby481c06c1 | 98.824 |
| 7 | OTU1480 | 31288 | Porphyromonas gingivalis HMT-619 Strain: DSM 20709 | 99.326 |
| 8 | OTU1402 | 30554 | Campylobacter gracilis HMT-623 Strain: ATCC 33236 | 99.061 |
| 9 | OTU1562 | 30112 | Peptostreptococcaceae [XI][G-6] [Eubacterium] nodatum HMT-694 Strain: ATCC 33099 | 98.824 |
| 10 | OTU365 | 30049 | Escherichia coli HMT-574 Strain: not listed | 99.333 |
| 11 | OTU363 | 28506 | Enterococcus faecalis HMT-604 Strain: not listed | 99.333 |
| 12 | OTU1435 | 27434 | Microbacterium flavescens HMT-186 Strain: C24KA | 98.605 |
| 13 | OTU10 | 26143 | Bacteroidaceae [G-1] bacterium HMT 272 Clone: _X083 | 99.324 |
| 14 | OTU996 | 23485 | Pyramidobacter piscolens HMT-357 Strain: W5455 | 99.532 |
| 15 | OTU113 | 22976 | Porphyromonas endodontalis HMT-273 Strain: ATCC 35406 | 99.327 |
| 16 | OTU44 | 21569 | Tannerella forsythia HMT-613 Strain: FDC 338 | 98.876 |
| 17 | OTU234 | 21493 | Bacillus subtilis HMT-468 Strain: ATCC 6633 | 99.113 |
| 18 | OTU1427 | 21433 | Pseudomonas stutzeri HMT-477 Strain: KC | 98.222 |
| 19 | OTU7 | 17587 | Desulfovibrio sp. HMT 040 Clone: BB161 | 96.222 |
| 20 | OTU126 | 16728 | Cutibacterium acnes HMT-530 Strain: JCM 6425 | 99.302 |