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. 2022 Jan 14;18(1):e1009733. doi: 10.1371/journal.pcbi.1009733

Table 2. List of model parameters.

Name Used in Description Units Bounds Prior
ω 0 all models initial conditions simplex Stan default
σ all models concentration parameter [0, ∞) Stan default
E k all models light-dependent growth parameter μmol photons m−2 s−1 [0, 5000] Normal(1000, 1000)
δ max all models maximum division rate d−1 [0,1Δt] Stan default
δincr(i) all models increment in division rate, size class i [0, 1] Stan default
γ max all but mf⋅⋅ maximum carbon fixation rate d−1 [0,1Δt*] Normal(10.0, 10.0)
β γ m p⋅⋅ exponent in carbon fixation power law [−10, 10] Normal(0, 0.1)
γmax(i) m f⋅⋅ maximum carbon fixation rate, size class i d−1 [0,1Δt*] Normal(μγ, σγ)
μ γ m f⋅⋅ hierarchical prior for mean of γmax(i) d−1 [0,1Δt*] Normal(10.0, 10.0)
σ γ m f⋅⋅ hierarchical prior for s.d. of γmax(i) d−1 [0, ∞) Exponential(0.1)
ρ max all but m⋅⋅f maximum carbon loss rate d−1 [0,1Δt*] Normal(3.0, 10.0)
ρmax(i) m ⋅⋅f maximum carbon loss rate, size class i d−1 [0,1Δt*] Normal(μγ, σγ)
μ ρ m ⋅⋅f hierarchical prior for mean of ρmax(i) d−1 [0,1Δt*] Normal(10.0, 10.0)
σ ρ m ⋅⋅f hierarchical prior for s.d. of ρmax(i) d−1 [0, ∞) Exponential(0.1)
τcontrol(i) m ⋅t⋅ control point i for time-dep. division spline [0, 1] Beta(9, 1)