Table 8.
Properties of H-bond interaction between top 3 docking poses of DKC derivative and exemestane, anastrazole, and letrozole with PDB ID: 3S79
Molecule ID | Interacting amino acid | Interacting protein atom | Interaction energy (Kcal/mol Å) | Interaction distance in Å | Interacting ligand atom | H-bond donor |
---|---|---|---|---|---|---|
DKC-1 | Arg 403 | NH2 | −2.11469 | 2.81011 | O(15) | Arg 403 |
NH2 | −0.680609 | 3.20804 | O(13) | Arg 403 | ||
Tyr 366 | O | −2.5 | 2.60305 | O(15) | Ligand | |
Gln 367 | NE2 | −2.5 | 2.77063 | O(13) | Gln367 | |
Met 68 | O | −1.95123 | 2.53415 | O(24) | Ligand | |
Ser 72 | OG | −0.709929 | 3.45801 | O(24) | Ligand | |
His 475 | N | −2.5 | 3.0684 | O(22) | His 475 | |
DKC-10 | Arg 79 | NH1 | −1.50535 | 3.29893 | O(12) | Arg 79 |
Arg 400 | NH1 | −1.98122 | 3.20376 | O(12) | Arg 400 | |
Ser 72 | O | −2.5 | 3.05591 | O(51) | Ser 72 | |
Lys 473 | O | −0.866787 | 3.32424 | N(48) | Ligand | |
N | −2.5 | 2.82116 | O(20) | Lys 473 | ||
Trp 67 | NE1 | −0.515552 | 2.60534 | O(62) | Tyr 67 | |
DKC-20 | Lys 243 | N | −1.0294 | 3.39412 | O(24) | Target Lys 243 |
Tyr 244 | OH | −2.5 | 2.98727 | O(24) | Both | |
OH | −2.5 | 2.69089 | O(25) | Both | ||
Pro 481 | O | −0.416259 | 2.34995 | O(42) | Ligand | |
His 480 | NE2 | −2.5 | 2.70549 | O(42) | Ligand | |
Arg 192 | NH2 | −0.734587 | 3.33627 | O(43) | Target Arg 192 | |
Glu 483 | OE1 | −2.5 | 2.92788 | O(43) | Ligand | |
DKC-21 | Arg 192 | NH2 | −0.189517 | 3.35792 | O(22) | Target Arg 192 |
Gln 218 | NE2 | −1.78868 | 3.24226 | O(22) | Target Gln 218 | |
NE2 | −2.19014 | 3.16197 | O(17) | Target Gln 218 | ||
Glu 483 | OE1 | −1.49575 | 3.30085 | O(22) | Ligand | |
Tyr 244 | OH | −2.5 | 3.09962 | O(33) | Target Tyr 244 | |
Lys 230 | N | −1.69385 | 3.26123 | O(33) | Lys 230 | |
Try 67 | O | −1.31209 | 3.33785 | O(38) | Ligand | |
Leu 66 | O | −1.7352 | 3.25396 | O(38) | Ligand | |
Anastrozole | Gln 428 | NE2 | −2.5 | 3.0995 | N(8) | Gln 428 |
Tyr 424 | N | −1.22505 | 2.83501 | N(21) | Tyr 424 | |
Exemestane | Arg 403 | NE | −0.687485 | 2.83446 | O(18) | Arg 403 |
NH2 | −0.322524 | 3.32084 | O(18) | Arg 403 | ||
Lys 473 | N | −1.84649 | 3.19827 | O(20) | Lys 473 | |
Letrozole | Val 422 | N | −2.5 | 3.09893 | N(6) | Val 422 |
Lys 440 | N | −2.5 | 3.09986 | N(2) | Lys 440 | |
Gln 428 | NE2 | −2.49168 | 3.10166 | N(2) | Gln 428 |