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. 2021 Sep 30;10:e72375. doi: 10.7554/eLife.72375
DNA oligonucleotides (all sequences are 5′ to 3′)
Cloning
Constructs Primer pairs (fragments)
ECT2pro:ECT2-FLAG-ADAR-ECT2ter (in pCAMBIA3300-U) LA336-695 (ECT2pro:ECT2), LA696-615 (FLAG-ADAR),LA616-337 (ECT2ter)
ECT2pro:FLAG-ADAR-ECT2ter(in pCAMBIA3300-U) LA336-697 (ECT2pro), LA698-615 (FLAG-ADAR), LA616-337 (ECT2ter)
AGO1pro:FLAG-ADAR-AGO1ter(in pCAMBIA3300-U) MVUSER1-11 (AGO1pro-FLAG), MVUSER12-22 (ADAR),MVUSER23-6 (AGO1ter)
FLAG-ADAR (in pGEM-T Easy) LA696-615 (FLAG-ADAR)
Primers for USER cloning
LA336.U-ECT2P.F GGCTTAAUAAGCAACGAACCAAGGGAAGACG
LA337.ECT2T-U.R GGTTTAAUAGGTTCTCTCGGCTTCTTTGAC
LA615.dADAR/ECT2T.R AGTTATUCGGCAAGACCGAACTCGTC
LA616.dADAR/ECT2T.F AATAACUAAGAGGATGGTGTCGCTC
LA695.ECT2/FLAG.R ATCGCAACCAUTTGCCACCACATCG
LA696.ECT2/FLAG.F ATGGTTGCGAUTACAAGGATGACGATGAC
LA697.ECT2P/FLAG.R AATCCAUGAGAGGAGATTCGACAAACAAAG
LA698.ECT2P/FLAG.F ATGGATUACAAGGATGACGATGAC
MVUSER1.F GGCTTAAUCTATCCAAATTCCAAACCATACG
MVUSER6.R GGTTTAAUGATTCTGTCGATTGCTTTGCTGG
MVUSER11.R ATTGGACTGUACTTGTCATCGTCATCCTTG
MVUSER12.F ACAGTCCAAUGGTGGTGCCACAG
MVUSER22.R ACTGCGGCAGCUCATTCGGCAAGACCGAACTCG
MVUSER23.F AGCTGCCGCAGUTGATTCACCCTCTATCTATCTTTATGACC
Primers for site-directed mutagenesis (QuickChange)
LA729.dADAR_E488Q_QC.F CAAAATCGAGTCCGGTCAGGGGACGATTCCAG
LA730.dADAR_E488Q_QC.R CTGGAATCGTCCCCTGACCGGACTCGATTTTG
Primers for detection of point mutations
LA660.dADAR_E488Q_CP(NlaIII).F CGAAAACGACACTGGTGTTG
LA735.dADAR_E488Q_CP(NlaIII).R GCTTTTCACTGGAATCGTCCCAT