Table 1.
Average contact prediction precision (%) on the CASP-CAPRI and PDB data
| HomoCASP | HeteroCASP | HomoPDB | HeteroPDB | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. of top predictions | 10 | L10 | L5 | 10 | L10 | L5 | 10 | L10 | L5 | 10 | L10 | L5 |
| BIPSPI (native) | 16 | 16 | 14 | 11 | 11 | 14 | 20 | 21 | 19 | 18 | 18 | 19 |
| DH (native) | 30 | 27 | 23 | 24 | 25 | 24 | ||||||
| CC (none) | 14 | 14 | 11 | 14 | 13 | 14 | ||||||
| GLINTER (native) | 54 | 51 | 47 | 44 | 48 | 37 | 48 | 48 | 47 | 47 | 47 | 46 |
| GLINTER (pred) | 43 | 40 | 37 | 24 | 30 | 23 | ||||||
Note: ‘Native’ means the experimental monomer structures are used. ‘None’ means that tertiary structures are not used at all. ‘Pred’ means the monomer structures predicted by AlphaFold are used. HomoCASP represents the set of 23 homodimers in the CASP-CAPRI data. HeteroCASP represents the set of nine heterodimers in the CASP-CAPRI data. For the PDB2018 test sets (HomoPDB and HeteroPDB), only the native monomer structures are used. ‘DH’ represents DeepHomo and ‘CC’ represents ComplexContact. In each column, the entry of the best performance is in bold.