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. 2021 Nov 16;38(4):892–899. doi: 10.1093/bioinformatics/btab776

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© The Author(s) 2021. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — Information flow diagram for VaLiAnT: input files are shown as grey document boxes with file types shown in brackets. Processes are shown as green boxes and output files are shown as blue document boxes with file extensions in brackets. Process data is shown in slanted white boxes. Quality control (QC) report contains sequences in a comma-separated value (CSV) file and is execution-specific. All other output files are targeton-specific, see user-manual: https://github.com/cancerit/VaLiAnT/wiki. Abbreviations: Variant Call Format (VCF), Browser Extensible Data (BED), General Transfer Format (GTF), General Feature Format 2 (GFF2) and Fast-all (FASTA)