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. Author manuscript; available in PMC: 2022 Jan 28.
Published in final edited form as: Nat Methods. 2021 Aug 26;18(9):1013–1026. doi: 10.1038/s41592-021-01206-3

Table 3 |.

Microscopy methods

Modalities Resolution (XY) Resolution (Z) Illumination Probes Acquisition time Post-acquisition processing Live or fixed
Standard fluorescence microscopy 250 nm 500 nm Epi, confocal, TIRF Conventional fluorescent probes Seconds Live, fixed
SIM, airyscan 80 nm–150 nm 250 nm–350 nm Widefield (epi and TIRF) Conventional fluorescent probes Seconds Yes, FTT Live, fixed
STED 30 nm–80 nm 150 nm Laser scanning Limited selection of probes (match depletion laser) Seconds No Live, fixed; optimal for fixed
Cryo-soft X-ray tomography 25 nm–40 nm 30 nm Widefield none No Fixed (near-native state vitrification)
PALM 20 nm 50 nm Widefield (epi and TIRF) Photoactivatible fluorescent proteins Minutes Yes (PSF mapping) Live, fixed
STORM 20 nm 50 nm Widefield (epi and TIRF) Photoswitchable dyes Minutes Yes (PSF mapping) Live, fixed
LLSM 100 nm–200 nm 400 nm Multi-Bessel beam plane illumination Conventional fluorescent probes Seconds, minutes or hours Not necessary, but often tracking dynamic processes Live, fixed; optimal for live
TEM <1 nm 70 nma Electron beam Contrast reagent, immunochemistry Seconds Yes Fixed
CLEM <1 nm/150 nmb 5 nmc Electron beam, widefield Contrast reagent, nanodots, and fluorescent proteins Minutes Yes (aligning) Live and/or fixed

Characteristics of imaging methods used to visualize EVs. epi, epifluorescence; FTT, fast Fourier transform; PSF, point spread function; TEM, transmission electron microscopy.

a

Resolution corresponding to the thickness of the section.

b

Resolution gap between electron microscopy and light microscopy data, respectively.

c

Tomography from double-tilted 250 nm sections.