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. 2020 Apr;9(4):2424–2433. doi: 10.21037/tcr.2020.03.32

Table S2. The HG-specific biological processes.

GOID P values_adjusted go_terms Dataset HG-specific
GO:0001525 1.264E-06 Angiogenesis ZB PD
GO:0036092 1.584E-05 Phosphatidylinositol-3-phosphate biosynthetic process MSKCC PD
GO:0006661 9.918E-05 Phosphatidylinositol biosynthetic process MSKCC PD
GO:0006650 0.0002442 Glycerophospholipid metabolic process ZB PD
GO:0036092 0.000248 Phosphatidylinositol-3-phosphate biosynthetic process ZB PD
GO:1902751 0.0002485 Positive regulation of cell cycle G2/M phase transition ZB PD
GO:0006650 0.0003463 Glycerophospholipid metabolic process MSKCC PD
GO:0006661 0.0007599 Phosphatidylinositol biosynthetic process ZB PD
GO:0006644 0.000767 Phospholipid metabolic process ZB PD
GO:0008584 0.0008151 Male gonad development MSKCC PD
GO:0046546 0.0008151 Development of primary male sexual characteristics MSKCC PD
GO:0006644 0.0010525 Phospholipid metabolic process MSKCC PD
GO:0046474 0.0010952 Glycerophospholipid biosynthetic process MSKCC PD
GO:0090218 0.0015026 Positive regulation of lipid kinase activity MSKCC PD
GO:0045017 0.0018219 Glycerolipid biosynthetic process MSKCC PD
GO:0019637 0.0019276 Organophosphate metabolic process ZB PD
GO:0007126 0.002289 Meiotic nuclear division ZB PD
GO:0008654 0.0023611 Phospholipid biosynthetic process MSKCC PD
GO:0043551 0.0026075 Regulation of phosphatidylinositol 3-kinase activity MSKCC PD
GO:1903046 0.0027839 Meiotic cell cycle process ZB PD
GO:1903727 0.0027864 Positive regulation of phospholipid metabolic process MSKCC PD
GO:0001525 0.0030352 Angiogenesis MSKCC PD
GO:0010518 0.0032304 Positive regulation of phospholipase activity ZB PD
GO:0030855 0.0040562 Epithelial cell differentiation MSKCC PD
GO:0035272 0.0042767 Exocrine system development MSKCC PD
GO:0043550 0.0042767 Regulation of lipid kinase activity MSKCC PD
GO:1902749 0.0046541 Regulation of cell cycle G2/M phase transition MSKCC PD
GO:0048146 0.0049414 Positive regulation of fibroblast proliferation MSKCC PD
GO:0033008 0.0050369 Positive regulation of mast cell activation involved in immune response ZB PD
GO:0043306 0.0050369 Positive regulation of mast cell degranulation ZB PD
GO:0046474 0.0050474 Glycerophospholipid biosynthetic process ZB PD
GO:0051321 0.0051928 Meiotic cell cycle ZB PD
GO:0043269 0.0052714 Regulation of ion transport MSKCC PD
GO:0014068 0.0059387 Positive regulation of phosphatidylinositol 3-kinase signaling ZB PD
GO:0033008 0.0062257 Positive regulation of mast cell activation involved in immune response MSKCC PD
GO:0043306 0.0062257 Positive regulation of mast cell degranulation MSKCC PD
GO:0033005 0.0066599 Positive regulation of mast cell activation ZB PD
GO:0045017 0.0071944 Glycerolipid biosynthetic process ZB PD
GO:0044839 0.0072853 Cell cycle G2/M phase transition MSKCC PD
GO:0014068 0.0073914 Positive regulation of phosphatidylinositol 3-kinase signaling MSKCC PD
GO:0002888 0.0080025 Positive regulation of myeloid leukocyte mediated immunity ZB PD
GO:0043302 0.0080025 Positive regulation of leukocyte degranulation ZB PD
GO:0033005 0.0082744 Positive regulation of mast cell activation MSKCC PD
GO:0008654 0.0087335 Phospholipid biosynthetic process ZB PD
GO:0034109 0.0088759 Homotypic cell-cell adhesion ZB PD
GO:0030855 0.0089828 Epithelial cell differentiation ZB PD
GO:1902751 0.0091779 Positive regulation of cell cycle G2/M phase transition MSKCC PD
GO:0006629 0.0093471 Lipid metabolic process MSKCC PD
GO:0008610 0.0100358 Lipid biosynthetic process MSKCC PD
GO:0002888 0.0100358 Positive regulation of myeloid leukocyte mediated immunity MSKCC PD
GO:0043302 0.0100358 Positive regulation of leukocyte degranulation MSKCC PD
GO:0034109 0.0114927 Homotypic cell-cell adhesion MSKCC PD
GO:0051656 0.0119185 Establishment of organelle localization ZB PD
GO:0043269 0.0125078 Regulation of ion transport ZB PD
GO:0060735 0.0129404 Regulation of eif2 alpha phosphorylation by dsRNA ZB PD
GO:0042102 0.0130323 Positive regulation of T cell proliferation ZB PD
GO:0030178 0.0141809 Negative regulation of Wnt signaling pathway ZB PD
GO:0006629 0.0150464 Lipid metabolic process ZB PD
GO:0051656 0.0165508 Establishment of organelle localization MSKCC PD
GO:0060735 0.0165508 Regulation of eif2 alpha phosphorylation by dsRNA MSKCC PD
GO:0007126 0.0170219 Meiotic nuclear division MSKCC PD
GO:0042102 0.0174305 Positive regulation of T cell proliferation MSKCC PD
GO:0090218 0.0181076 Positive regulation of lipid kinase activity ZB PD
GO:0032885 0.0187746 Regulation of polysaccharide biosynthetic process ZB PD
GO:0030178 0.0195602 Negative regulation of Wnt signaling pathway MSKCC PD
GO:1903046 0.0198476 Meiotic cell cycle process MSKCC PD
GO:0008610 0.020913 Lipid biosynthetic process ZB PD
GO:0032752 0.0213557 Positive regulation of interleukin-3 production ZB PD
GO:0042223 0.0213557 Interleukin-3 biosynthetic process ZB PD
GO:0043366 0.0213557 Beta selection ZB PD
GO:0045399 0.0213557 Regulation of interleukin-3 biosynthetic process ZB PD
GO:0045401 0.0213557 Positive regulation of interleukin-3 biosynthetic process ZB PD
GO:0007257 0.0216117 Activation of JUN kinase activity ZB PD
GO:0032881 0.0216117 Regulation of polysaccharide metabolic process ZB PD
GO:1902749 0.0218429 Regulation of cell cycle G2/M phase transition ZB PD
GO:0044839 0.0237717 Cell cycle G2/M phase transition ZB PD
GO:0033003 0.0243556 Regulation of mast cell activation ZB PD
GO:0043551 0.0243556 Regulation of phosphatidylinositol 3-kinase activity ZB PD
GO:1903727 0.0252945 Positive regulation of phospholipid metabolic process ZB PD
GO:0032885 0.0253146 Regulation of polysaccharide biosynthetic process MSKCC PD
GO:0009409 0.0262411 Response to cold ZB PD
GO:1903307 0.0262411 Positive regulation of regulated secretory pathway ZB PD
GO:0032752 0.0274151 Positive regulation of interleukin-3 production MSKCC PD
GO:0042223 0.0274151 Interleukin-3 biosynthetic process MSKCC PD
GO:0043366 0.0274151 Beta selection MSKCC PD
GO:0045399 0.0274151 Regulation of interleukin-3 biosynthetic process MSKCC PD
GO:0045401 0.0274151 Positive regulation of interleukin-3 biosynthetic process MSKCC PD
GO:0008584 0.0282742 Male gonad development ZB PD
GO:0046546 0.0282742 Development of primary male sexual characteristics ZB PD
GO:0002351 0.0282742 Serotonin production involved in inflammatory response ZB PD
GO:0002442 0.0282742 Serotonin secretion involved in inflammatory response ZB PD
GO:0002554 0.0282742 Serotonin secretion by platelet ZB PD
GO:0032252 0.0282742 Secretory granule localization ZB PD
GO:0032672 0.0282742 Regulation of interleukin-3 production ZB PD
GO:0045425 0.0282742 Positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process ZB PD
GO:0045588 0.0282742 Positive regulation of gamma-delta T cell differentiation ZB PD
GO:1901843 0.0282742 Positive regulation of high voltage-gated calcium channel activity ZB PD
GO:0007257 0.0285333 Activation of JUN kinase activity MSKCC PD
GO:0032881 0.0285333 Regulation of polysaccharide metabolic process MSKCC PD
GO:0042129 0.0307477 Regulation of T cell proliferation ZB PD
GO:0051321 0.0309104 Meiotic cell cycle MSKCC PD
GO:0035272 0.0318221 Exocrine system development ZB PD
GO:0043550 0.0318221 Regulation of lipid kinase activity ZB PD
GO:0033003 0.0322116 Regulation of mast cell activation MSKCC PD
GO:0048146 0.0343113 Positive regulation of fibroblast proliferation ZB PD
GO:0010897 0.0343113 Negative regulation of triglyceride catabolic process ZB PD
GO:0032632 0.0343113 Interleukin-3 production ZB PD
GO:0045423 0.0343113 Regulation of granulocyte macrophage colony-stimulating factor biosynthetic process ZB PD
GO:0060699 0.0343113 Regulation of endoribonuclease activity ZB PD
GO:0007405 0.0343407 Neuroblast proliferation ZB PD
GO:0009409 0.0344727 Response to cold MSKCC PD
GO:1903307 0.0344727 Positive regulation of regulated secretory pathway MSKCC PD
GO:0002351 0.0359801 Serotonin production involved in inflammatory response MSKCC PD
GO:0002442 0.0359801 Serotonin secretion involved in inflammatory response MSKCC PD
GO:0002554 0.0359801 Serotonin secretion by platelet MSKCC PD
GO:0032252 0.0359801 Secretory granule localization MSKCC PD
GO:0032672 0.0359801 Regulation of interleukin-3 production MSKCC PD
GO:0045425 0.0359801 Positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process MSKCC PD
GO:0045588 0.0359801 Positive regulation of gamma-delta T cell differentiation MSKCC PD
GO:1901843 0.0359801 Positive regulation of high voltage-gated calcium channel activity MSKCC PD
GO:0010518 0.040339 Positive regulation of phospholipase activity MSKCC PD
GO:0042129 0.0411271 Regulation of T cell proliferation MSKCC PD
GO:0010897 0.0437818 Negative regulation of triglyceride catabolic process MSKCC PD
GO:0032632 0.0437818 Interleukin-3 production MSKCC PD
GO:0045423 0.0437818 Regulation of granulocyte macrophage colony-stimulating factor biosynthetic process MSKCC PD
GO:0060699 0.0437818 Regulation of endoribonuclease activity MSKCC PD
GO:0007405 0.0450633 Neuroblast proliferation MSKCC PD
GO:0019637 0.045281 Organophosphate metabolic process MSKCC PD
GO:0042542 1.365E-07 Response to hydrogen peroxide MSKCC MD
GO:0014812 1.111E-06 Muscle cell migration MSKCC MD
GO:0042493 1.147E-06 Response to drug MSKCC MD
GO:1901652 1.569E-06 Response to peptide ZB MD
GO:0044092 1.981E-06 Negative regulation of molecular function ZB MD
GO:0043434 5.246E-06 Response to peptide hormone ZB MD
GO:0000302 1.172E-05 Response to reactive oxygen species MSKCC MD
GO:0034504 1.315E-05 Protein localization to nucleus MSKCC MD
GO:0033365 1.481E-05 Protein localization to organelle MSKCC MD
GO:0070301 2.532E-05 Cellular response to hydrogen peroxide MSKCC MD
GO:0009607 3.12E-05 Response to biotic stimulus MSKCC MD
GO:0034614 4.066E-05 Cellular response to reactive oxygen species MSKCC MD
GO:1904705 4.887E-05 Regulation of vascular smooth muscle cell proliferation MSKCC MD
GO:1990874 4.887E-05 Vascular smooth muscle cell proliferation MSKCC MD
GO:0003279 6.629E-05 Cardiac septum development MSKCC MD
GO:0051707 6.996E-05 Response to other organism MSKCC MD
GO:0043207 7.068E-05 Response to external biotic stimulus MSKCC MD
GO:1901652 7.61E-05 Response to peptide MSKCC MD
GO:0051223 9.568E-05 Regulation of protein transport MSKCC MD
GO:0060411 0.0001143 Cardiac septum morphogenesis MSKCC MD
GO:0014909 0.0001298 Smooth muscle cell migration MSKCC MD
GO:0032496 0.0001321 Response to lipopolysaccharide MSKCC MD
GO:0045682 0.0001383 Regulation of epidermis development MSKCC MD
GO:0006273 0.0001448 Lagging strand elongation MSKCC MD
GO:0043434 0.0001755 Response to peptide hormone MSKCC MD
GO:0002237 0.0001807 Response to molecule of bacterial origin MSKCC MD
GO:0003179 0.000188 Heart valve morphogenesis MSKCC MD
GO:0050864 0.0002231 Regulation of B cell activation MSKCC MD
GO:0003170 0.0002759 Heart valve development MSKCC MD
GO:0051570 0.0003745 Regulation of histone H3-K9 methylation ZB MD
GO:0044092 0.0004357 Negative regulation of molecular function MSKCC MD
GO:0042100 0.0004756 B cell proliferation MSKCC MD
GO:0000302 0.0005009 Response to reactive oxygen species ZB MD
GO:1904019 0.0005234 Epithelial cell apoptotic process MSKCC MD
GO:0006266 0.0005342 DNA ligation ZB MD
GO:0034614 0.00056 Cellular response to reactive oxygen species ZB MD
GO:2001242 0.0005685 Regulation of intrinsic apoptotic signaling pathway MSKCC MD
GO:0046879 0.0006353 Hormone secretion MSKCC MD
GO:0006271 0.0006777 DNA strand elongation involved in DNA replication MSKCC MD
GO:0003205 0.0007089 Cardiac chamber development MSKCC MD
GO:0003007 0.0007878 Heart morphogenesis MSKCC MD
GO:0009914 0.0008096 Hormone transport MSKCC MD
GO:0034504 0.0008947 Protein localization to nucleus ZB MD
GO:0051567 0.000944 Histone H3-K9 methylation ZB MD
GO:0030888 0.001 Regulation of B cell proliferation MSKCC MD
GO:0032611 0.001 Interleukin-1 beta production MSKCC MD
GO:0033157 0.001093 Regulation of intracellular protein transport ZB MD
GO:1902042 0.001286 Negative regulation of extrinsic apoptotic signaling pathway via death domain receptors ZB MD
GO:0050852 0.0012901 T cell receptor signaling pathway MSKCC MD
GO:0006266 0.0012907 DNA ligation MSKCC MD
GO:0032845 0.0013576 Negative regulation of homeostatic process MSKCC MD
GO:0003281 0.0014821 Ventricular septum development MSKCC MD
GO:0033143 0.0014821 Regulation of intracellular steroid hormone receptor signaling pathway MSKCC MD
GO:0022616 0.001571 DNA strand elongation MSKCC MD
GO:0071887 0.0016635 Leukocyte apoptotic process ZB MD
GO:1904035 0.0017433 Regulation of epithelial cell apoptotic process MSKCC MD
GO:0032612 0.0019145 Interleukin-1 production MSKCC MD
GO:0097306 0.0019363 Cellular response to alcohol ZB MD
GO:0034968 0.0021658 Histone lysine methylation ZB MD
GO:0061647 0.002279 Histone H3-K9 modification ZB MD
GO:0033146 0.002285 Regulation of intracellular estrogen receptor signaling pathway MSKCC MD
GO:0022408 0.0023527 Negative regulation of cell-cell adhesion MSKCC MD
GO:0033157 0.0023985 Regulation of intracellular protein transport MSKCC MD
GO:0051223 0.0024086 Regulation of protein transport ZB MD
GO:0032446 0.0024086 Protein modification by small protein conjugation ZB MD
GO:0051573 0.0028681 Negative regulation of histone H3-K9 methylation ZB MD
GO:0018022 0.0028725 Peptidyl-lysine methylation ZB MD
GO:0046824 0.0028725 Positive regulation of nucleocytoplasmic transport ZB MD
GO:0031648 0.0030756 Protein destabilization MSKCC MD
GO:0009636 0.0032692 Response to toxic substance ZB MD
GO:0006261 0.0033055 DNA-dependent DNA replication MSKCC MD
GO:0006273 0.0033374 Lagging strand elongation ZB MD
GO:0002223 0.0035118 Stimulatory C-type lectin receptor signaling pathway ZB MD
GO:0002220 0.0036986 Innate immune response activating cell surface receptor signaling pathway ZB MD
GO:0051103 0.0038896 DNA ligation involved in DNA repair ZB MD
GO:0003007 0.0040602 Heart morphogenesis ZB MD
GO:0016571 0.0042866 Histone methylation ZB MD
GO:0097306 0.0044943 Cellular response to alcohol MSKCC MD
GO:0031060 0.0045733 Regulation of histone methylation ZB MD
GO:0023061 0.0047426 Signal release MSKCC MD
GO:0051573 0.0047426 Negative regulation of histone H3-K9 methylation MSKCC MD
GO:0001666 0.0047462 Response to hypoxia MSKCC MD
GO:0006284 0.0050431 Base-excision repair MSKCC MD
GO:0018205 0.0051017 Peptidyl-lysine modification ZB MD
GO:0036293 0.0053204 Response to decreased oxygen levels MSKCC MD
GO:0061647 0.0053204 Histone H3-K9 modification MSKCC MD
GO:0006261 0.0055276 DNA-dependent DNA replication ZB MD
GO:2001020 0.0055567 Regulation of response to DNA damage stimulus MSKCC MD
GO:0032446 0.0057176 Protein modification by small protein conjugation MSKCC MD
GO:0014909 0.0058867 Smooth muscle cell migration ZB MD
GO:0070664 0.0058867 Negative regulation of leukocyte proliferation ZB MD
GO:0090316 0.0059508 Positive regulation of intracellular protein transport MSKCC MD
GO:0032651 0.0061433 Regulation of interleukin-1 beta production MSKCC MD
GO:0006304 0.0062479 DNA modification MSKCC MD
GO:0051103 0.0062941 DNA ligation involved in DNA repair MSKCC MD
GO:0030520 0.0064205 Intracellular estrogen receptor signaling pathway MSKCC MD
GO:0042093 0.0064205 T-helper cell differentiation MSKCC MD
GO:0045936 0.0065605 Negative regulation of phosphate metabolic process ZB MD
GO:0010563 0.0066057 Negative regulation of phosphorus metabolic process ZB MD
GO:0045604 0.0067768 Regulation of epidermal cell differentiation MSKCC MD
GO:0031061 0.0067822 Negative regulation of histone methylation ZB MD
GO:0034968 0.0067993 Histone lysine methylation MSKCC MD
GO:0002294 0.0071277 CD4-positive, alpha-beta T cell differentiation involved in immune response MSKCC MD
GO:0002287 0.0074349 alpha-beta T cell activation involved in immune response MSKCC MD
GO:0002293 0.0074349 alpha-beta T cell differentiation involved in immune response MSKCC MD
GO:0031663 0.0074349 Lipopolysaccharide-mediated signaling pathway MSKCC MD
GO:0038034 0.0077505 Signal transduction in absence of ligand ZB MD
GO:0097192 0.0077505 Extrinsic apoptotic signaling pathway in absence of ligand ZB MD
GO:0034284 0.0078981 Response to monosaccharide MSKCC MD
GO:0006271 0.0081662 DNA strand elongation involved in DNA replication ZB MD
GO:0046660 0.0082366 Female sex differentiation MSKCC MD
GO:0014812 0.008241 Muscle cell migration ZB MD
GO:0003283 0.0088126 Atrial septum development ZB MD
GO:0023019 0.0088126 Signal transduction involved in regulation of gene expression ZB MD
GO:0007259 0.0089793 JAK-STAT cascade ZB MD
GO:0097696 0.0089793 STAT cascade ZB MD
GO:0018022 0.0091089 Peptidyl-lysine methylation MSKCC MD
GO:0046824 0.0091089 Positive regulation of nucleocytoplasmic transport MSKCC MD
GO:0001541 0.0092698 Ovarian follicle development MSKCC MD
GO:0070301 0.0095041 Cellular response to hydrogen peroxide ZB MD
GO:0002292 0.0096977 T cell differentiation involved in immune response MSKCC MD
GO:1903533 0.0097929 Regulation of protein targeting ZB MD
GO:0006479 0.0099192 Protein methylation ZB MD
GO:0008213 0.0099192 Protein alkylation ZB MD
GO:0050852 0.0099192 T cell receptor signaling pathway ZB MD
GO:0032845 0.0101971 Negative regulation of homeostatic process ZB MD
GO:0031060 0.0104978 Regulation of histone methylation MSKCC MD
GO:0032652 0.0104978 Regulation of interleukin-1 production MSKCC MD
GO:0008625 0.0108141 Extrinsic apoptotic signaling pathway via death domain receptors ZB MD
GO:0032496 0.0108141 Response to lipopolysaccharide ZB MD
GO:0009743 0.0108748 Response to carbohydrate MSKCC MD
GO:0001947 0.0108748 Heart looping MSKCC MD
GO:0048678 0.0108748 Response to axon injury MSKCC MD
GO:0072091 0.0108748 Regulation of stem cell proliferation MSKCC MD
GO:1903533 0.0110206 Regulation of protein targeting MSKCC MD
GO:0002223 0.0110206 Stimulatory C-type lectin receptor signaling pathway MSKCC MD
GO:0031061 0.0110206 Negative regulation of histone methylation MSKCC MD
GO:0043367 0.0112179 CD4-positive, alpha-beta T cell differentiation MSKCC MD
GO:0002220 0.0115502 Innate immune response activating cell surface receptor signaling pathway MSKCC MD
GO:1904705 0.0117161 Regulation of vascular smooth muscle cell proliferation ZB MD
GO:1990874 0.0117161 Vascular smooth muscle cell proliferation ZB MD
GO:0042100 0.0117593 B cell proliferation ZB MD
GO:1904019 0.0124536 Epithelial cell apoptotic process ZB MD
GO:0006471 0.0125445 Protein ADP-ribosylation ZB MD
GO:0002237 0.0127762 Response to molecule of bacterial origin ZB MD
GO:0061371 0.0130477 Determination of heart left/right asymmetry MSKCC MD
GO:0016571 0.0132027 Histone methylation MSKCC MD
GO:0022616 0.0132769 DNA strand elongation ZB MD
GO:0008585 0.0132769 Female gonad development ZB MD
GO:0003143 0.0134719 Embryonic heart tube morphogenesis MSKCC MD
GO:0008589 0.0134719 Regulation of smoothened signaling pathway MSKCC MD
GO:0035710 0.0134719 CD4-positive, alpha-beta T cell activation MSKCC MD
GO:0070664 0.0134719 Negative regulation of leukocyte proliferation MSKCC MD
GO:0071301 0.0136096 Cellular response to vitamin B1 ZB MD
GO:0090347 0.0136096 Regulation of cellular organohalogen metabolic process ZB MD
GO:0090348 0.0136096 Regulation of cellular organofluorine metabolic process ZB MD
GO:0090349 0.0136096 Negative regulation of cellular organohalogen metabolic process ZB MD
GO:0090350 0.0136096 Negative regulation of cellular organofluorine metabolic process ZB MD
GO:1904404 0.0136096 Response to formaldehyde ZB MD
GO:0003279 0.0136766 Cardiac septum development ZB MD
GO:0046545 0.0139992 Development of primary female sexual characteristics ZB MD
GO:0009743 0.0140538 Response to carbohydrate ZB MD
GO:0043086 0.0143878 Negative regulation of catalytic activity ZB MD
GO:0003283 0.0143938 Atrial septum development MSKCC MD
GO:0023019 0.0143938 Signal transduction involved in regulation of gene expression MSKCC MD
GO:0007389 0.015078 Pattern specification process MSKCC MD
GO:0006304 0.0153019 DNA modification ZB MD
GO:0051100 0.0154442 Negative regulation of binding MSKCC MD
GO:0045936 0.0155204 Negative regulation of phosphate metabolic process MSKCC MD
GO:0051570 0.015525 Regulation of histone H3-K9 methylation MSKCC MD
GO:0010563 0.01554 Negative regulation of phosphorus metabolic process MSKCC MD
GO:0046634 0.0155981 Regulation of alpha-beta T cell activation MSKCC MD
GO:0071301 0.0155981 Cellular response to vitamin B1 MSKCC MD
GO:0090347 0.0155981 Regulation of cellular organohalogen metabolic process MSKCC MD
GO:0090348 0.0155981 Regulation of cellular organofluorine metabolic process MSKCC MD
GO:0090349 0.0155981 Negative regulation of cellular organohalogen metabolic process MSKCC MD
GO:0090350 0.0155981 Negative regulation of cellular organofluorine metabolic process MSKCC MD
GO:1904404 0.0155981 Response to formaldehyde MSKCC MD
GO:0033146 0.0159353 Regulation of intracellular estrogen receptor signaling pathway ZB MD
GO:0051051 0.0167241 Negative regulation of transport MSKCC MD
GO:0038034 0.0167508 Signal transduction in absence of ligand MSKCC MD
GO:0097192 0.0167508 Extrinsic apoptotic signaling pathway in absence of ligand MSKCC MD
GO:0046660 0.0191336 Female sex differentiation ZB MD
GO:0031648 0.01952 Protein destabilization ZB MD
GO:0006471 0.0196997 Protein ADP-ribosylation MSKCC MD
GO:0043086 0.0202833 Negative regulation of catalytic activity MSKCC MD
GO:0003179 0.0203264 Heart valve morphogenesis ZB MD
GO:0003230 0.0203264 Cardiac atrium development ZB MD
GO:0033365 0.0219486 Protein localization to organelle ZB MD
GO:0042542 0.0231473 Response to hydrogen peroxide ZB MD
GO:0010868 0.0231473 Negative regulation of triglyceride biosynthetic process ZB MD
GO:0071460 0.0231473 Cellular response to cell-matrix adhesion ZB MD
GO:0090345 0.0231473 Cellular organohalogen metabolic process ZB MD
GO:0090346 0.0231473 Cellular organofluorine metabolic process ZB MD
GO:0050864 0.0232449 Regulation of B cell activation ZB MD
GO:0044262 0.0234314 Cellular carbohydrate metabolic process MSKCC MD
GO:0003170 0.0234325 Heart valve development ZB MD
GO:0008625 0.0238195 Extrinsic apoptotic signaling pathway via death domain receptors MSKCC MD
GO:0043029 0.0244019 T cell homeostasis ZB MD
GO:0046825 0.0252439 Regulation of protein export from nucleus ZB MD
GO:0018205 0.0254654 Peptidyl-lysine modification MSKCC MD
GO:0090316 0.0255328 Positive regulation of intracellular protein transport ZB MD
GO:0022408 0.0260472 Negative regulation of cell-cell adhesion ZB MD
GO:0006284 0.0260472 Base-excision repair ZB MD
GO:0010883 0.0260472 Regulation of lipid storage ZB MD
GO:0007259 0.0262577 JAK-STAT cascade MSKCC MD
GO:0097696 0.0262577 STAT cascade MSKCC MD
GO:0051567 0.0262577 Histone H3-K9 methylation MSKCC MD
GO:0010868 0.0262577 Negative regulation of triglyceride biosynthetic process MSKCC MD
GO:0071460 0.0262577 Cellular response to cell-matrix adhesion MSKCC MD
GO:0090345 0.0262577 Cellular organohalogen metabolic process MSKCC MD
GO:0090346 0.0262577 Cellular organofluorine metabolic process MSKCC MD
GO:0044262 0.0265122 Cellular carbohydrate metabolic process ZB MD
GO:0042493 0.0271005 Response to drug ZB MD
GO:0006479 0.0275738 Protein methylation MSKCC MD
GO:0008213 0.0275738 Protein alkylation MSKCC MD
GO:0008585 0.0277022 Female gonad development MSKCC MD
GO:0051100 0.029382 Negative regulation of binding ZB MD
GO:0032651 0.0295013 Regulation of interleukin-1 beta production ZB MD
GO:0043525 0.0295013 Positive regulation of neuron apoptotic process ZB MD
GO:0051055 0.0295013 Negative regulation of lipid biosynthetic process ZB MD
GO:0007389 0.0295013 Pattern specification process ZB MD
GO:0023061 0.0295013 Signal release ZB MD
GO:0030520 0.0295013 Intracellular estrogen receptor signaling pathway ZB MD
GO:0042093 0.0295013 T-helper cell differentiation ZB MD
GO:0009822 0.0295013 Alkaloid catabolic process ZB MD
GO:0010266 0.0295013 Response to vitamin B1 ZB MD
GO:0033076 0.0295013 Isoquinoline alkaloid metabolic process ZB MD
GO:0071494 0.0295013 Cellular response to UV-C ZB MD
GO:0098760 0.0295013 Response to interleukin-7 ZB MD
GO:0098761 0.0295013 Cellular response to interleukin-7 ZB MD
GO:1990785 0.0295013 Response to water-immersion restraint stress ZB MD
GO:0071887 0.029714 Leukocyte apoptotic process MSKCC MD
GO:0045604 0.0298719 Regulation of epidermal cell differentiation ZB MD
GO:0046545 0.0305378 Development of primary female sexual characteristics MSKCC MD
GO:1902042 0.0306947 Negative regulation of extrinsic apoptotic signaling pathway via death domain receptors MSKCC MD
GO:0002294 0.0309829 CD4-positive, alpha-beta T cell differentiation involved in immune response ZB MD
GO:0002287 0.0320739 alpha-beta T cell activation involved in immune response ZB MD
GO:0002293 0.0320739 alpha-beta T cell differentiation involved in immune response ZB MD
GO:0031663 0.0320739 Lipopolysaccharide-mediated signaling pathway ZB MD
GO:0003230 0.0321242 Cardiac atrium development MSKCC MD
GO:2001242 0.0323501 Regulation of intrinsic apoptotic signaling pathway ZB MD
GO:0051051 0.0324454 Negative regulation of transport ZB MD
GO:0051707 0.0338559 Response to other organism ZB MD
GO:0043207 0.033997 Response to external biotic stimulus ZB MD
GO:0009822 0.0354738 Alkaloid catabolic process MSKCC MD
GO:0010266 0.0354738 Response to vitamin B1 MSKCC MD
GO:0033076 0.0354738 Isoquinoline alkaloid metabolic process MSKCC MD
GO:0071494 0.0354738 Cellular response to UV-C MSKCC MD
GO:0098760 0.0354738 Response to interleukin-7 MSKCC MD
GO:0098761 0.0354738 Cellular response to interleukin-7 MSKCC MD
GO:1990785 0.0354738 Response to water-immersion restraint stress MSKCC MD
GO:0003205 0.0358613 Cardiac chamber development ZB MD
GO:0001541 0.0363016 Ovarian follicle development ZB MD
GO:0007089 0.0363016 Traversing start control point of mitotic cell cycle ZB MD
GO:0010989 0.0363016 Negative regulation of low-density lipoprotein particle clearance ZB MD
GO:0014042 0.0363016 Positive regulation of neuron maturation ZB MD
GO:0035799 0.0363016 Ureter maturation ZB MD
GO:0042997 0.0363016 Negative regulation of Golgi to plasma membrane protein transport ZB MD
GO:0070427 0.0363016 Nucleotide-binding oligomerization domain containing 1 signaling pathway ZB MD
GO:2000048 0.0363016 Negative regulation of cell-cell adhesion mediated by cadherin ZB MD
GO:0046879 0.0364954 Hormone secretion ZB MD
GO:0002292 0.0371894 T cell differentiation involved in immune response ZB MD
GO:0030888 0.0371894 Regulation of B cell proliferation ZB MD
GO:0032611 0.0371894 Interleukin-1 beta production ZB MD
GO:0043029 0.0386747 T cell homeostasis MSKCC MD
GO:0032652 0.0392552 Regulation of interleukin-1 production ZB MD
GO:2001020 0.039929 Regulation of response to DNA damage stimulus ZB MD
GO:0046825 0.0400926 Regulation of protein export from nucleus MSKCC MD
GO:0001947 0.040316 Heart looping ZB MD
GO:0048678 0.040316 Response to axon injury ZB MD
GO:0072091 0.040316 Regulation of stem cell proliferation ZB MD
GO:0009914 0.0407189 Hormone transport ZB MD
GO:0009607 0.0410816 Response to biotic stimulus ZB MD
GO:0043367 0.0414048 CD4-positive, alpha-beta T cell differentiation ZB MD
GO:0010883 0.0416577 Regulation of lipid storage MSKCC MD
GO:0007089 0.0432135 Traversing start control point of mitotic cell cycle MSKCC MD
GO:0010989 0.0432135 Negative regulation of low-density lipoprotein particle clearance MSKCC MD
GO:0014042 0.0432135 Positive regulation of neuron maturation MSKCC MD
GO:0035799 0.0432135 Ureter maturation MSKCC MD
GO:0042997 0.0432135 Negative regulation of Golgi to plasma membrane protein transport MSKCC MD
GO:0070427 0.0432135 Nucleotide-binding oligomerization domain containing 1 signaling pathway MSKCC MD
GO:2000048 0.0432135 Negative regulation of cell-cell adhesion mediated by cadherin MSKCC MD
GO:0003281 0.0437357 Ventricular septum development ZB MD
GO:0033143 0.0437357 Regulation of intracellular steroid hormone receptor signaling pathway ZB MD
GO:0060411 0.0437357 Cardiac septum morphogenesis ZB MD
GO:0061371 0.0447239 Determination of heart left/right asymmetry ZB MD
GO:0009636 0.0455879 Response to toxic substance MSKCC MD
GO:0003143 0.0456721 Embryonic heart tube morphogenesis ZB MD
GO:0008589 0.0456721 Regulation of smoothened signaling pathway ZB MD
GO:0035710 0.0456721 CD4-positive, alpha-beta T cell activation ZB MD
GO:0001666 0.0462698 Response to hypoxia ZB MD
GO:0043525 0.0463606 Positive regulation of neuron apoptotic process MSKCC MD
GO:0051055 0.0463606 Negative regulation of lipid biosynthetic process MSKCC MD
GO:0045682 0.0465784 Regulation of epidermis development ZB MD
GO:1904035 0.0465784 Regulation of epithelial cell apoptotic process ZB MD
GO:0034284 0.0473956 Response to monosaccharide ZB MD
GO:0032612 0.0473956 Interleukin-1 production ZB MD
GO:0036293 0.047653 Response to decreased oxygen levels ZB MD
GO:0046634 0.0493719 Regulation of alpha-beta T cell activation ZB MD
GO:1905005 0.0303648 Regulation of epithelial to mesenchymal transition involved in endocardial cushion formation ZB WD
GO:0003198 0.0462411 Epithelial to mesenchymal transition involved in endocardial cushion formation ZB WD
GO:0034110 0.0498585 Regulation of homotypic cell-cell adhesion ZB WD
GO:1905005 0.027475 Regulation of epithelial to mesenchymal transition involved in endocardial cushion formation MSKCC WD
GO:0003198 0.0414965 Epithelial to mesenchymal transition involved in endocardial cushion formation MSKCC WD
GO:0034110 0.0441837 Regulation of homotypic cell-cell adhesion MSKCC WD

Note: dataset, our dataset was named ZB. PD, poor differentiated; MD, moderate differentiated; WD, well differentiated.